RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 IRAK3Q9Y616 596 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 C2orf16Q68DN1 1984 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 A0A1B0GUA9 196 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 C2orf71A6NGG8 1288 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 B4GALT5O43286 388 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 NAMPTP43490 491 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 SLC11A1P49279 550 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 AFF1P51825 1210 aaKnown RBP13.33□□□□□ -0.28
USP40-210ENST00000454354 MCTP1Q6DN14 999 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 MAEAQ7L5Y9 396 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 DDX53Q86TM3 631 aaKnown RBP13.33□□□□□ -0.28
USP40-210ENST00000454354 ZBTB8OSQ8IWT0 167 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 MRPL43Q8N983 215 aaKnown RBP13.33□□□□□ -0.28
USP40-210ENST00000454354 KHSRPQ92945 711 aaKnown RBP eCLIP13.33□□□□□ -0.28
USP40-210ENST00000454354 TMEM175Q9BSA9 504 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 MMTAG2Q9BU76 263 aaKnown RBP13.33□□□□□ -0.28
USP40-210ENST00000454354 CCDC113Q9H0I3 377 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 BHMT2Q9H2M3 363 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 DDX19AQ9NUU7 478 aaKnown RBP13.33□□□□□ -0.28
USP40-210ENST00000454354 STK39Q9UEW8 545 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 KIAA1024Q9UPX6 916 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 SMC3Q9UQE7 1217 aa13.33□□□□□ -0.28
USP40-210ENST00000454354 ARL5CA6NH57 179 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 H3BQV1 296 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 DDHD2O94830 711 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 SRGAP2BP0DMP2 458 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 RBM10P98175 930 aaKnown RBP13.32□□□□□ -0.28
USP40-210ENST00000454354 DSC1Q08554 894 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 CUL4AQ13619 759 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 PPP2R5AQ15172 486 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 KRT79Q5XKE5 535 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 DTHD1Q6ZMT9 781 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 VPS52Q8N1B4 723 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 KIFAP3Q92845 792 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 POP1Q99575 1024 aaKnown RBP13.32□□□□□ -0.28
USP40-210ENST00000454354 VN1R3Q9BXE9 311 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 C1QTNF1Q9BXJ1 281 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 TRIM6Q9C030 488 aaPredicted RBP13.32□□□□□ -0.28
USP40-210ENST00000454354 GBP3Q9H0R5 595 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 RNF39Q9H2S5 420 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 NXF3Q9H4D5 531 aaKnown RBP13.32□□□□□ -0.28
USP40-210ENST00000454354 DAXXQ9UER7 740 aaPredicted RBP13.32□□□□□ -0.28
USP40-210ENST00000454354 GIT1Q9Y2X7 761 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 HES2Q9Y543 173 aa13.32□□□□□ -0.28
USP40-210ENST00000454354 VWA8A3KMH1 1905 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 PP2D1A8MPX8 630 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 PI4K2BG5E9Z4 385 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 NPTXRO95502 500 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 EFEMP2O95967 443 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 POMCP01189 267 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 CTSAP10619 480 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 SSTR3P32745 418 aaPredicted RBP13.31□□□□□ -0.28
USP40-210ENST00000454354 MLH1P40692 756 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 GIT2Q14161 759 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 BMS1Q14692 1282 aaKnown RBP13.31□□□□□ -0.28
USP40-210ENST00000454354 HYIQ5T013 277 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 ARL6IP4Q66PJ3 421 aaKnown RBP13.31□□□□□ -0.28
USP40-210ENST00000454354 COLGALT2Q8IYK4 626 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 HACE1Q8IYU2 909 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 KCTD17Q8N5Z5 321 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 SUSD6Q92537 303 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 CASP10Q92851 521 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 FAM193BQ96PV7 902 aaPredicted RBP13.31□□□□□ -0.28
USP40-210ENST00000454354 GAD1Q99259 594 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 BACH2Q9BYV9 841 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 PDZD7Q9H5P4 517 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 EPHX3Q9H6B9 360 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 DNM3Q9UQ16 869 aa13.31□□□□□ -0.28
USP40-210ENST00000454354 TTLL13PA6NNM8 815 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 E9PMD0 336 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 ACKR2O00590 384 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 NRP1O14786 923 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 N4BP3O15049 544 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 CLASP2O75122 1294 aaKnown RBP13.3□□□□□ -0.28
USP40-210ENST00000454354 EDN1P05305 212 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 PRKCBP05771 671 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 CDC25AP30304 524 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 SCNN1GP51170 649 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 EFNA5P52803 228 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 MAPK6Q16659 721 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 LARP1BQ659C4 914 aaKnown RBP13.3□□□□□ -0.28
USP40-210ENST00000454354 ANKRD54Q6NXT1 300 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 SYCE2Q6PIF2 218 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 KCNK18Q7Z418 384 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 BRAPQ7Z569 592 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 CDR2LQ86X02 465 aaPredicted RBP13.3□□□□□ -0.28
USP40-210ENST00000454354 RNF168Q8IYW5 571 aaPredicted RBP13.3□□□□□ -0.28
USP40-210ENST00000454354 GSTCDQ8NEC7 633 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 DEPTORQ8TB45 409 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 IFT74Q96LB3 600 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 ZFP42Q96MM3 310 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 S1PR5Q9H228 398 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 MARCH5Q9NX47 278 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 MIOSQ9NXC5 875 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 FAN1Q9Y2M0 1017 aa13.3□□□□□ -0.28
USP40-210ENST00000454354 USP15Q9Y4E8 981 aaPredicted RBP13.3□□□□□ -0.28
USP40-210ENST00000454354 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.29□□□□□ -0.28
USP40-210ENST00000454354 CXCL14O95715 111 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 ALDH2P05091 517 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 HOXB8P17481 243 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms