RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 SLC35F6Q8N357 371 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 FBXL13Q8NEE6 735 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 UBXN4Q92575 508 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 CCDC127Q96BQ5 260 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 SAAL1Q96ER3 474 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 MFSD14AQ96MC6 490 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 FBXL18Q96ME1 805 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 KIFC3Q9BVG8 833 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 C1orf112Q9NSG2 853 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 PRMT7Q9NVM4 692 aaPredicted RBP6.53□□□□□ -1.36
VPS50-205ENST00000441602 ARGLU1Q9NWB6 273 aaPredicted RBP6.53□□□□□ -1.36
VPS50-205ENST00000441602 ARHGAP20Q9P2F6 1191 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 INTUQ9ULD6 942 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 TNPO2O14787 897 aaKnown RBP6.53□□□□□ -1.36
VPS50-205ENST00000441602 EPHB6O15197 1021 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 NOL4O94818 638 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 LCA5LO95447 670 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 H2AFZP0C0S5 128 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 GCLMP48507 274 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 BPIFB4P59827 614 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 BIRC3Q13489 604 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 BMS1Q14692 1282 aaKnown RBP6.53□□□□□ -1.36
VPS50-205ENST00000441602 DRAP1Q14919 205 aaPredicted RBP6.53□□□□□ -1.36
VPS50-205ENST00000441602 ENOX2Q16206 610 aaKnown RBP6.53□□□□□ -1.36
VPS50-205ENST00000441602 PAXIP1Q6ZW49 1069 aaPredicted RBP6.53□□□□□ -1.36
VPS50-205ENST00000441602 H2AFVQ71UI9 128 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 REM2Q8IYK8 340 aaPredicted RBP6.53□□□□□ -1.36
VPS50-205ENST00000441602 ZNF710Q8N1W2 664 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 METTL13Q8N6R0 699 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 SMC1BQ8NDV3 1235 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 UBE2Q2Q8WVN8 375 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 DHX38Q92620 1227 aaKnown RBP6.53□□□□□ -1.36
VPS50-205ENST00000441602 FAM213AQ9BRX8 229 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 BCAS3Q9H6U6 928 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 CDC23Q9UJX2 597 aa6.53□□□□□ -1.36
VPS50-205ENST00000441602 ABT1Q9ULW3 272 aaKnown RBP6.53□□□□□ -1.36
VPS50-205ENST00000441602 KIAA1217Q5T5P2 1943 aa6.52□□□□□ -1.36
VPS50-205ENST00000441602 CLDN3O15551 220 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 PJA2O43164 708 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 TOM1L1O75674 476 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 ITGBL1O95965 494 aaPredicted RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 ACTN1P12814 892 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 TNNI1P19237 187 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 YWHAEP62258 255 aaKnown RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 LAMTOR4Q0VGL1 99 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 PPFIA1Q13136 1202 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 CAPSQ13938 189 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 KIF22Q14807 665 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 HSDL1Q3SXM5 330 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 EFCAB12Q6NXP0 572 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 PPP1R2P3Q6NXS1 205 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 TAPT1Q6NXT6 567 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 CBWD2Q8IUF1 395 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 RNF149Q8NC42 400 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 CAGE1Q8TC20 777 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 PARD3BQ8TEW8 1205 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 AFG1LQ8WV93 481 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 PRPF31Q8WWY3 499 aaKnown RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 TAF4BQ92750 862 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 APBA2Q99767 749 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 ANKFY1Q9P2R3 1169 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 STYXL1Q9Y6J8 313 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 IGKV6-21A0A0C4DH24 114 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 RBAK-RBAKDNI3L0D1 243 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 INO80B-WBP1J3KQ70 363 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 KPNA6O60684 536 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 SRGAP2CP0DJJ0 459 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 ARHGAP25P42331 645 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 SOX10P56693 466 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 ARHGAP44Q17R89 818 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 EPC2Q52LR7 807 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 GOLGA1Q92805 767 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 COPS5Q92905 334 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 RPGRIP1Q96KN7 1286 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 CGRRF1Q99675 332 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 KATNAL1Q9BW62 490 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 INO80BQ9C086 356 aaPredicted RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 SPC25Q9HBM1 224 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 UBE2TQ9NPD8 197 aaPredicted RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 PDGFCQ9NRA1 345 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 SEPT11Q9NVA2 429 aaKnown RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 RBAKQ9NYW8 714 aaPredicted RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 USP20Q9Y2K6 914 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 MYH9P35579 1960 aaKnown RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 OGTO15294 1046 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 TNNC2P02585 160 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 TUBBP07437 444 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 ADRB2P07550 413 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 DLATP10515 647 aaKnown RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 USP8P40818 1118 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 ADCYAP1R1P41586 468 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 PIK3CAP42336 1068 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 FCGRTP55899 365 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 CYP27A1Q02318 531 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 GRM1Q13255 1194 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 PRPF4BQ13523 1007 aaKnown RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 MFSD14CQ5VZR4 134 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 OLFML2BQ68BL8 750 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 CDCA2Q69YH5 1023 aaPredicted RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 IFNL1Q8IU54 200 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms