RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 PPM1EQ8WY54 764 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 LPPQ93052 612 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 P2RX5Q93086 422 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 CCDC113Q9H0I3 377 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 RSAD1Q9HA92 442 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 TYW1Q9NV66 732 aaKnown RBP12.62□□□□□ -0.39
COL28A1-203ENST00000435823 LARSQ9P2J5 1176 aaKnown RBP12.62□□□□□ -0.39
COL28A1-203ENST00000435823 PCDHB12Q9Y5F1 795 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 MTCH2Q9Y6C9 303 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 CHD7Q9P2D1 2997 aa12.62□□□□□ -0.39
COL28A1-203ENST00000435823 KIAA1671Q9BY89 1806 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 NPHP3-ACAD11A0A0J9YXS1 232 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 A0A1B0GUA9 196 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 SFI1A8K8P3 1242 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 FAM13AO94988 1023 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 NPTXRO95502 500 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 ME1P48163 572 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 KRT85P78386 507 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 ARSHQ5FYA8 562 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 SV2BQ7L1I2 683 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 APBB1IPQ7Z5R6 666 aaPredicted RBP12.61□□□□□ -0.39
COL28A1-203ENST00000435823 LRRC15Q8TF66 581 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 SPIRE2Q8WWL2 714 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 REEP2Q9BRK0 252 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 ADPGKQ9BRR6 497 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 EIF2AQ9BY44 585 aaKnown RBP12.61□□□□□ -0.39
COL28A1-203ENST00000435823 LMAN2LQ9H0V9 348 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 TMEM134Q9H6X4 195 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 ARHGAP28Q9P2N2 729 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 INPP5FQ9Y2H2 1132 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 ZDHHC9Q9Y397 364 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 IPPQ9Y573 584 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 MYH11P35749 1972 aa12.61□□□□□ -0.39
COL28A1-203ENST00000435823 CARNS1A5YM72 827 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 SLC16A4O15374 487 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 OFD1O75665 1012 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 PPM1AP35813 382 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 NUCB2P80303 420 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 RNASELQ05823 741 aaKnown RBP12.6□□□□□ -0.39
COL28A1-203ENST00000435823 STRN3Q13033 797 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 GIT2Q14161 759 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 CCDC85BQ15834 202 aaPredicted RBP12.6□□□□□ -0.39
COL28A1-203ENST00000435823 NOMO2Q5JPE7 1267 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 ATF7IP2Q5U623 682 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 CDR2LQ86X02 465 aaPredicted RBP12.6□□□□□ -0.39
COL28A1-203ENST00000435823 THNSL1Q8IYQ7 743 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 MYCT1Q8N699 235 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 PDILTQ8N807 584 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 COLGALT1Q8NBJ5 622 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 SMG8Q8ND04 991 aaKnown RBP12.6□□□□□ -0.39
COL28A1-203ENST00000435823 MRPL38Q96DV4 380 aaKnown RBP12.6□□□□□ -0.39
COL28A1-203ENST00000435823 NTPCRQ9BSD7 190 aaKnown RBP12.6□□□□□ -0.39
COL28A1-203ENST00000435823 APOL6Q9BWW8 343 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 MRPL4Q9BYD3 311 aaKnown RBP12.6□□□□□ -0.39
COL28A1-203ENST00000435823 PANK2Q9BZ23 570 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 ZHX3Q9H4I2 956 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 PDZD7Q9H5P4 517 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 CWH43Q9H720 699 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 PARVGQ9HBI0 331 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 FAM13BQ9NYF5 915 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 KANSL3Q9P2N6 904 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 RCOR1Q9UKL0 485 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 TRANK1O15050 2925 aa12.6□□□□□ -0.39
COL28A1-203ENST00000435823 MEIS3P2A8K0S8 358 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 SCP2P22307 547 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 DCAF4L1Q3SXM0 396 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 TIGD5Q53EQ6 642 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 AGMOQ6ZNB7 445 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 LRRC55Q6ZSA7 311 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 KLHL23Q8NBE8 558 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 SPATA32Q96LK8 384 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 ZNF558Q96NG5 402 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 FAM193BQ96PV7 902 aaPredicted RBP12.59□□□□□ -0.39
COL28A1-203ENST00000435823 LRRC27Q9C0I9 530 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 NXF3Q9H4D5 531 aaKnown RBP12.59□□□□□ -0.39
COL28A1-203ENST00000435823 ALG13Q9NP73 1137 aaKnown RBP12.59□□□□□ -0.39
COL28A1-203ENST00000435823 HCSTQ9UBK5 93 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 PARP2Q9UGN5 583 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 PCDHA7Q9UN72 937 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 PLAGL2Q9UPG8 496 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 TNFSF13BQ9Y275 285 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 GIT1Q9Y2X7 761 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 HES2Q9Y543 173 aa12.59□□□□□ -0.39
COL28A1-203ENST00000435823 ZMYM2Q9UBW7 1377 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 TTLL13PA6NNM8 815 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 K7ENM7 598 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 GRM6O15303 877 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 TRAK2O60296 914 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 MAPTP10636 758 aaKnown RBP12.58□□□□□ -0.4
COL28A1-203ENST00000435823 ABCD1P33897 745 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 MLH1P40692 756 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 ALDH7A1P49419 539 aaKnown RBP12.58□□□□□ -0.4
COL28A1-203ENST00000435823 ZNF131P52739 623 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 NCKAP1LP55160 1127 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 UBE3AQ05086 875 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 SKIV2LQ15477 1246 aaKnown RBP12.58□□□□□ -0.4
COL28A1-203ENST00000435823 AXDND1Q5T1B0 1012 aaPredicted RBP12.58□□□□□ -0.4
COL28A1-203ENST00000435823 NT5DC1Q5TFE4 455 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 SHC4Q6S5L8 630 aa12.58□□□□□ -0.4
COL28A1-203ENST00000435823 KCNT2Q6UVM3 1135 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms