RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 TOM1L1O75674 476 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 ZSCAN20P17040 1043 aaPredicted RBP13.49□□□□□ -0.25
LINC00339-204ENST00000434233 GARTP22102 1010 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 PROZP22891 400 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 LIG4P49917 911 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 PAK1Q13153 545 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 MYBPC2Q14324 1141 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 NFIL3Q16649 462 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 PLEKHG4Q58EX7 1191 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 ANKRD40Q6AI12 368 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 NOTUMQ6P988 496 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 HS2ST1Q7LGA3 356 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 C12orf56Q8IXR9 622 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 C7orf61Q8IZ16 206 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 RPUSD2Q8IZ73 545 aaKnown RBP13.49□□□□□ -0.25
LINC00339-204ENST00000434233 NELFBQ8WX92 580 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 CCDC51Q96ER9 411 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 SCLYQ96I15 445 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 TSG101Q99816 390 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 FTHL17Q9BXU8 183 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 NAT10Q9H0A0 1025 aaKnown RBP13.49□□□□□ -0.25
LINC00339-204ENST00000434233 AGPAT5Q9NUQ2 364 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 RWDD2AQ9UIY3 292 aa13.49□□□□□ -0.25
LINC00339-204ENST00000434233 HNRNPDLO14979 420 aaKnown RBP13.48□□□□□ -0.25
LINC00339-204ENST00000434233 KIAA0391O15091 583 aaKnown RBP13.48□□□□□ -0.25
LINC00339-204ENST00000434233 CLDN3O15551 220 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 B4GALT5O43286 388 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 LRRC63Q05C16 580 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 DSC3Q14574 896 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 TMEM132AQ24JP5 1023 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 EDRF1Q3B7T1 1238 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 ANO6Q4KMQ2 910 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 ZCWPW2Q504Y3 356 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 KLHL10Q6JEL2 608 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 SLC39A4Q6P5W5 647 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 APBB1IPQ7Z5R6 666 aaPredicted RBP13.48□□□□□ -0.25
LINC00339-204ENST00000434233 SLC9A9Q8IVB4 645 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 DBF4BQ8NFT6 615 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 ENOX1Q8TC92 643 aaKnown RBP13.48□□□□□ -0.25
LINC00339-204ENST00000434233 SEPT8Q92599 483 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 CPB2Q96IY4 423 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 ZBTB45Q96K62 511 aaPredicted RBP13.48□□□□□ -0.25
LINC00339-204ENST00000434233 BPIFA3Q9BQP9 254 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 ADPGKQ9BRR6 497 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 IFIH1Q9BYX4 1025 aaKnown RBP13.48□□□□□ -0.25
LINC00339-204ENST00000434233 DNAJC25Q9H1X3 360 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 TMX1Q9H3N1 280 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 DMAC2Q9NW81 257 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 USP20Q9Y2K6 914 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 BRCA2P51587 3418 aa13.48□□□□□ -0.25
LINC00339-204ENST00000434233 SCN5AQ14524 2016 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 ZMYM2Q9UBW7 1377 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 TANC1Q9C0D5 1861 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 ABLIM1O14639 778 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 CLIC2O15247 247 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 LDHAP00338 332 aaKnown RBP13.47□□□□□ -0.25
LINC00339-204ENST00000434233 PFKMP08237 780 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 RPL13P26373 211 aaKnown RBP13.47□□□□□ -0.25
LINC00339-204ENST00000434233 ADSSP30520 456 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 RGS19P49795 217 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 PMS1P54277 932 aaKnown RBP13.47□□□□□ -0.25
LINC00339-204ENST00000434233 MCL1Q07820 350 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 TTI2Q6NXR4 508 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 SLC27A1Q6PCB7 646 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 MPZL3Q6UWV2 235 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 C11orf57Q6ZUT1 292 aaPredicted RBP13.47□□□□□ -0.25
LINC00339-204ENST00000434233 TCHPQ9BT92 498 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 TRAIPQ9BWF2 469 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 IKZF4Q9H2S9 585 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 TSPY26PQ9H489 355 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 PDZD7Q9H5P4 517 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 AGPAT3Q9NRZ7 376 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 CTNND2Q9UQB3 1225 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 PIN4Q9Y237 131 aaKnown RBP13.47□□□□□ -0.25
LINC00339-204ENST00000434233 NR2E3Q9Y5X4 410 aa13.47□□□□□ -0.25
LINC00339-204ENST00000434233 A0A0B4J269 797 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 TRIM49BA6NDI0 452 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 MCF2P10911 925 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 CSF2RAP15509 400 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 ZNF165P49910 485 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 STX17P56962 302 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 FKBP3Q00688 224 aaKnown RBP13.46□□□□□ -0.25
LINC00339-204ENST00000434233 PPIGQ13427 754 aaKnown RBP eCLIP13.46□□□□□ -0.25
LINC00339-204ENST00000434233 ADAM9Q13443 819 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 KYAT1Q16773 422 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 DCAF4L1Q3SXM0 396 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 EEF1DP3Q658K8 133 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 ARMCX5Q6P1M9 558 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 CNKSR3Q6P9H4 555 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 DEFB128Q7Z7B8 93 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 RTN4RL1Q86UN2 441 aaPredicted RBP13.46□□□□□ -0.25
LINC00339-204ENST00000434233 ZC3H3Q8IXZ2 948 aaKnown RBP13.46□□□□□ -0.25
LINC00339-204ENST00000434233 POMGNT1Q8WZA1 660 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 BADQ92934 168 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 VWCEQ96DN2 955 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 MED15Q96RN5 788 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 DUSP9Q99956 384 aaKnown RBP13.46□□□□□ -0.25
LINC00339-204ENST00000434233 HAPLN2Q9GZV7 340 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 IL23AQ9NPF7 189 aa13.46□□□□□ -0.25
LINC00339-204ENST00000434233 RGS18Q9NS28 235 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms