RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 RDH13Q8NBN7 331 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 FLAD1Q8NFF5 587 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 ALG3Q92685 438 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 TMEM109Q9BVC6 243 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 ST6GALNAC4Q9H4F1 302 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 ERVK-5Q9HDB9 667 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 MTUS1Q9ULD2 1270 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 COL11A2P13942 1736 aaPredicted RBP12.17□□□□□ -0.46
USP4-205ENST00000431357 PLS3P13797 630 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 SMTNP53814 917 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 PLTPP55058 493 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 ADCY2Q08462 1091 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 ZNF211Q13398 564 aaPredicted RBP12.17□□□□□ -0.46
USP4-205ENST00000431357 SLMAPQ14BN4 828 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 ERMARDQ5T6L9 678 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 GKAP1Q5VSY0 366 aaPredicted RBP12.17□□□□□ -0.46
USP4-205ENST00000431357 ZDHHC24Q6UX98 284 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 COL23A1Q86Y22 540 aaPredicted RBP12.17□□□□□ -0.46
USP4-205ENST00000431357 PALB2Q86YC2 1186 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 SLC20A1Q8WUM9 679 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 TATDN2Q93075 761 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 SEC16BQ96JE7 1060 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 STMN4Q9H169 189 aaPredicted RBP12.17□□□□□ -0.46
USP4-205ENST00000431357 FEM1BQ9UK73 627 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 SNX24Q9Y343 169 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 SLX4Q8IY92 1834 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 PPP1R12AO14974 1030 aaPredicted RBP12.16□□□□□ -0.46
USP4-205ENST00000431357 LYPLA2O95372 231 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 ALAS1P13196 640 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 PEX5P50542 639 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 UBXN2AP68543 259 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 CYP1B1Q16678 543 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 NBPF9Q3BBW0 867 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 CYFIP1Q7L576 1253 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 CPLX4Q7Z7G2 160 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 ARHGEF19Q8IW93 802 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 PRELID2Q8N945 189 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 ACER1Q8TDN7 264 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 GLG1Q92896 1179 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 PRMT6Q96LA8 375 aaPredicted RBP12.16□□□□□ -0.46
USP4-205ENST00000431357 XPO6Q96QU8 1125 aaKnown RBP12.16□□□□□ -0.46
USP4-205ENST00000431357 TMOD4Q9NZQ9 345 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 ZNF646O15015 1829 aaPredicted RBP12.16□□□□□ -0.46
USP4-205ENST00000431357 CAND2O75155 1236 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 AGTP01019 485 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 MMP10P09238 476 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 DLG4P78352 724 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 GTF2BQ00403 316 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 PPP3CAQ08209 521 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 LACTB2Q53H82 288 aaPredicted RBP12.16□□□□□ -0.46
USP4-205ENST00000431357 KCNV1Q6PIU1 500 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 ADAT2Q7Z6V5 191 aaKnown RBP12.16□□□□□ -0.46
USP4-205ENST00000431357 LDHDQ86WU2 507 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 FAM71AQ8IYT1 594 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 CHMP6Q96FZ7 201 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 EPB41L4BQ9H329 900 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 PCIF1Q9H4Z3 704 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 GRHL1Q9NZI5 618 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 HSPBP1Q9NZL4 362 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 ZBTB21Q9ULJ3 1066 aa12.16□□□□□ -0.46
USP4-205ENST00000431357 H0YIN7 160 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 GHRP10912 638 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 DRD4P21917 467 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 COMTP21964 271 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 MMP13P45452 471 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 GCLMP48507 274 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 MXI1P50539 228 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 HSD17B4P51659 736 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 MFAP3P55082 362 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 CCDC137Q6PK04 289 aaKnown RBP12.15□□□□□ -0.46
USP4-205ENST00000431357 GPATCH11Q8N954 259 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 SUPT20HQ8NEM7 779 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 FBXO25Q8TCJ0 367 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 FAM151AQ8WW52 585 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 CD101Q93033 1021 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 C18orf8Q96DM3 657 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 UVRAGQ9P2Y5 699 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 SUFUQ9UMX1 484 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 EXOC7Q9UPT5 735 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 ZNF536O15090 1300 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 RPTORQ8N122 1335 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 SCN9AQ15858 1988 aa12.15□□□□□ -0.46
USP4-205ENST00000431357 DCDC2CA8MYV0 355 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 RGS16O15492 202 aaPredicted RBP12.14□□□□□ -0.47
USP4-205ENST00000431357 CYP1A2P05177 515 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 RARGP13631 454 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 COPB2P35606 906 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 RARRES1P49788 294 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 MNAT1P51948 309 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 MESDQ14696 234 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 QPCTQ16769 361 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 C1orf220Q5T0J3 134 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 SLC13A5Q86YT5 568 aaPredicted RBP12.14□□□□□ -0.47
USP4-205ENST00000431357 CCDC13Q8IYE1 715 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 C12orf50Q8NA57 414 aaPredicted RBP12.14□□□□□ -0.47
USP4-205ENST00000431357 EPS8L1Q8TE68 723 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 KRT35Q92764 455 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 RNF25Q96BH1 459 aaPredicted RBP12.14□□□□□ -0.47
USP4-205ENST00000431357 CCDC114Q96M63 670 aa12.14□□□□□ -0.47
USP4-205ENST00000431357 PLVAPQ9BX97 442 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms