RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PPFIBP1Q86W92 1011 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 FEZF2Q8TBJ5 459 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 ASAP3Q8TDY4 903 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 GTF3C6Q969F1 213 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 TMEM175Q9BSA9 504 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 XPNPEP1Q9NQW7 623 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 MRPL17Q9NRX2 175 aaKnown RBP16.15■□□□□ 0.18
SDC1-204ENST00000429035 KANSL3Q9P2N6 904 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 PCDHA12Q9UN75 941 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 BRD1O95696 1058 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 ALDH2P05091 517 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 SCNN1GP51170 649 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 ANAPC15P60006 121 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 NCBP1Q09161 790 aaKnown RBP16.14■□□□□ 0.17
SDC1-204ENST00000429035 CAPSQ13938 189 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 MXD4Q14582 209 aaPredicted RBP16.14■□□□□ 0.17
SDC1-204ENST00000429035 CCDC149Q6ZUS6 474 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 MAEAQ7L5Y9 396 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 MRPL10Q7Z7H8 261 aaKnown RBP16.14■□□□□ 0.17
SDC1-204ENST00000429035 DIS3L2Q8IYB7 885 aaKnown RBP16.14■□□□□ 0.17
SDC1-204ENST00000429035 HACE1Q8IYU2 909 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 SMG8Q8ND04 991 aaKnown RBP16.14■□□□□ 0.17
SDC1-204ENST00000429035 CNNM3Q8NE01 707 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 NSUN7Q8NE18 718 aaKnown RBP16.14■□□□□ 0.17
SDC1-204ENST00000429035 SLC22A17Q8WUG5 538 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 KLHL5Q96PQ7 755 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 GAD1Q99259 594 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 PRRX2Q99811 253 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 HERC2P3Q9BVR0 1158 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 POLR3FQ9H1D9 316 aaPredicted RBP16.14■□□□□ 0.17
SDC1-204ENST00000429035 TTC12Q9H892 705 aaPredicted RBP16.14■□□□□ 0.17
SDC1-204ENST00000429035 MARCH5Q9NX47 278 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 IRAK3Q9Y616 596 aa16.14■□□□□ 0.17
SDC1-204ENST00000429035 A0A087WWV3 80 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 POTEMA6NI47 508 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 BTBD18B2RXH4 712 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 WNT7AO00755 349 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 SLITRK3O94933 977 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 CNPP09543 421 aaKnown RBP16.13■□□□□ 0.17
SDC1-204ENST00000429035 FDPSP14324 419 aaKnown RBP16.13■□□□□ 0.17
SDC1-204ENST00000429035 AXLP30530 894 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 PTENP60484 403 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 TCF15Q12870 199 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 TMEM132AQ24JP5 1023 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 CDR2LQ86X02 465 aaPredicted RBP16.13■□□□□ 0.17
SDC1-204ENST00000429035 UBALD2Q8IYN6 164 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 PIGOQ8TEQ8 1089 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 TNFRSF25Q93038 417 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 CCDC51Q96ER9 411 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 ZFP42Q96MM3 310 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 RNF39Q9H2S5 420 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 MFSD1Q9H3U5 465 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 NXF3Q9H4D5 531 aaKnown RBP16.13■□□□□ 0.17
SDC1-204ENST00000429035 UBN1Q9NPG3 1134 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 MAN1C1Q9NR34 630 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 STK39Q9UEW8 545 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 LIMD1Q9UGP4 676 aa16.13■□□□□ 0.17
SDC1-204ENST00000429035 LRRIQ4A6NIV6 560 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 DGAT1O75907 488 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 NPTXRO95502 500 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 SOD2P04179 222 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 AVPR2P30518 371 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 RARRES1P49788 294 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 CLCN4P51793 760 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 GUCY1B3Q02153 619 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 MBTD1Q05BQ5 628 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 ACSF2Q96CM8 615 aaPredicted RBP16.12■□□□□ 0.17
SDC1-204ENST00000429035 RPS6KC1Q96S38 1066 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 CSRNP2Q9H175 543 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 ANKEF1Q9NU02 776 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 PARP2Q9UGN5 583 aa16.12■□□□□ 0.17
SDC1-204ENST00000429035 ARL5CA6NH57 179 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 F8W810 466 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 B4GALT5O43286 388 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 NR1I2O75469 434 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 ADH1AP07327 375 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 ARF4P18085 180 aaPredicted RBP16.11■□□□□ 0.17
SDC1-204ENST00000429035 GLRA2P23416 452 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 AKAP5P24588 427 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 MCM7P33993 719 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 GLUD2P49448 558 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 NEK4P51957 841 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 GLYCTKQ8IVS8 523 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 COLGALT2Q8IYK4 626 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 ZDHHC14Q8IZN3 488 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 PLCD3Q8N3E9 789 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 GPRC5CQ9NQ84 441 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 KLK14Q9P0G3 267 aa16.11■□□□□ 0.17
SDC1-204ENST00000429035 MTCL1Q9Y4B5 1905 aaKnown RBP16.11■□□□□ 0.17
SDC1-204ENST00000429035 GLUD1P00367 558 aa16.1■□□□□ 0.17
SDC1-204ENST00000429035 LIG1P18858 919 aa16.1■□□□□ 0.17
SDC1-204ENST00000429035 PCBP1Q15365 356 aaKnown RBP eCLIP16.1■□□□□ 0.17
SDC1-204ENST00000429035 ELMSAN1Q6PJG2 1045 aa16.1■□□□□ 0.17
SDC1-204ENST00000429035 TAS1R1Q7RTX1 841 aa16.1■□□□□ 0.17
SDC1-204ENST00000429035 GPR149Q86SP6 731 aa16.1■□□□□ 0.17
SDC1-204ENST00000429035 ATOH1Q92858 354 aaPredicted RBP16.1■□□□□ 0.17
SDC1-204ENST00000429035 B3GALT6Q96L58 329 aa16.1■□□□□ 0.17
SDC1-204ENST00000429035 MIOSQ9NXC5 875 aa16.1■□□□□ 0.17
SDC1-204ENST00000429035 USTQ9Y2C2 406 aa16.1■□□□□ 0.17
SDC1-204ENST00000429035 SSX2IPQ9Y2D8 614 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms