RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 SLC18A3Q16572 532 aa28.78■■■□□ 2.2
LDB1-202ENST00000425280 ZNF571Q7Z3V5 609 aaPredicted RBP28.78■■■□□ 2.2
LDB1-202ENST00000425280 AFG1LQ8WV93 481 aa28.78■■■□□ 2.2
LDB1-202ENST00000425280 ERO1AQ96HE7 468 aa28.78■■■□□ 2.2
LDB1-202ENST00000425280 EXTL3O43909 919 aa28.78■■■□□ 2.2
LDB1-202ENST00000425280 LAMTOR4Q0VGL1 99 aa28.78■■■□□ 2.2
LDB1-202ENST00000425280 DRAP1Q14919 205 aaPredicted RBP28.78■■■□□ 2.2
LDB1-202ENST00000425280 TAF1CQ15572 869 aaPredicted RBP28.78■■■□□ 2.2
LDB1-202ENST00000425280 PSPC1Q8WXF1 523 aaKnown RBP28.78■■■□□ 2.2
LDB1-202ENST00000425280 POP1Q99575 1024 aaKnown RBP28.78■■■□□ 2.2
LDB1-202ENST00000425280 NAPGQ99747 312 aaPredicted RBP28.78■■■□□ 2.2
LDB1-202ENST00000425280 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP28.78■■■□□ 2.2
LDB1-202ENST00000425280 GPR88Q9GZN0 384 aa28.78■■■□□ 2.2
LDB1-202ENST00000425280 HAPLN2Q9GZV7 340 aa28.78■■■□□ 2.2
LDB1-202ENST00000425280 A0A087X0T9 212 aa28.77■■■□□ 2.2
LDB1-202ENST00000425280 PJA2O43164 708 aa28.77■■■□□ 2.2
LDB1-202ENST00000425280 LRRN2O75325 713 aa28.77■■■□□ 2.2
LDB1-202ENST00000425280 FAM228BP0C875 321 aa28.77■■■□□ 2.2
LDB1-202ENST00000425280 SOX5P35711 763 aa28.77■■■□□ 2.2
LDB1-202ENST00000425280 MXD4Q14582 209 aaPredicted RBP28.77■■■□□ 2.2
LDB1-202ENST00000425280 LRRN4CLQ8ND94 238 aa28.77■■■□□ 2.2
LDB1-202ENST00000425280 JPH2Q9BR39 696 aaPredicted RBP28.77■■■□□ 2.2
LDB1-202ENST00000425280 TARS2Q9BW92 718 aaKnown RBP28.77■■■□□ 2.2
LDB1-202ENST00000425280 ADAMTS1Q9UHI8 967 aa28.77■■■□□ 2.2
LDB1-202ENST00000425280 FERP16591 822 aa28.76■■■□□ 2.19
LDB1-202ENST00000425280 RFX1P22670 979 aa28.76■■■□□ 2.19
LDB1-202ENST00000425280 ENPEPQ07075 957 aa28.76■■■□□ 2.19
LDB1-202ENST00000425280 MORN1Q5T089 497 aa28.76■■■□□ 2.19
LDB1-202ENST00000425280 ZBTB45Q96K62 511 aaPredicted RBP28.76■■■□□ 2.19
LDB1-202ENST00000425280 ABHD16BQ9H3Z7 469 aa28.76■■■□□ 2.19
LDB1-202ENST00000425280 KIAA1586Q9HCI6 787 aa28.76■■■□□ 2.19
LDB1-202ENST00000425280 ZNF233A6NK53 670 aa28.76■■■□□ 2.19
LDB1-202ENST00000425280 GFPT2O94808 682 aa28.76■■■□□ 2.19
LDB1-202ENST00000425280 SMPD1P17405 629 aa28.76■■■□□ 2.19
LDB1-202ENST00000425280 MAP2K1Q02750 393 aaPredicted RBP28.76■■■□□ 2.19
LDB1-202ENST00000425280 ACVR2BQ13705 512 aa28.76■■■□□ 2.19
LDB1-202ENST00000425280 NAA30Q147X3 362 aaPredicted RBP28.76■■■□□ 2.19
LDB1-202ENST00000425280 CDCA2Q69YH5 1023 aaPredicted RBP28.76■■■□□ 2.19
LDB1-202ENST00000425280 SLFN12LQ6IEE8 588 aa28.76■■■□□ 2.19
LDB1-202ENST00000425280 TOPORSQ9NS56 1045 aaPredicted RBP28.76■■■□□ 2.19
LDB1-202ENST00000425280 AGO2Q9UKV8 859 aaKnown RBP28.76■■■□□ 2.19
LDB1-202ENST00000425280 MACROD2A1Z1Q3 448 aa28.75■■■□□ 2.19
LDB1-202ENST00000425280 KIAA0391O15091 583 aaKnown RBP28.75■■■□□ 2.19
LDB1-202ENST00000425280 ECM2O94769 699 aaPredicted RBP28.75■■■□□ 2.19
LDB1-202ENST00000425280 EFNA5P52803 228 aa28.75■■■□□ 2.19
LDB1-202ENST00000425280 DUSP28Q4G0W2 176 aa28.75■■■□□ 2.19
LDB1-202ENST00000425280 KRT39Q6A163 491 aa28.75■■■□□ 2.19
LDB1-202ENST00000425280 CCDC113Q9H0I3 377 aa28.75■■■□□ 2.19
LDB1-202ENST00000425280 TMEM8AQ9HCN3 771 aa28.75■■■□□ 2.19
LDB1-202ENST00000425280 SLC5A4Q9NY91 659 aa28.75■■■□□ 2.19
LDB1-202ENST00000425280 SUCLA2Q9P2R7 463 aaPredicted RBP28.75■■■□□ 2.19
LDB1-202ENST00000425280 TULP1O00294 542 aaPredicted RBP28.74■■■□□ 2.19
LDB1-202ENST00000425280 SRGAP2CP0DJJ0 459 aa28.74■■■□□ 2.19
LDB1-202ENST00000425280 USP37Q86T82 979 aa28.74■■■□□ 2.19
LDB1-202ENST00000425280 ARHGEF19Q8IW93 802 aa28.74■■■□□ 2.19
LDB1-202ENST00000425280 SECISBP2LQ93073 1101 aaKnown RBP28.74■■■□□ 2.19
LDB1-202ENST00000425280 ZHX1Q9UKY1 873 aaPredicted RBP28.74■■■□□ 2.19
LDB1-202ENST00000425280 EVI5O60447 810 aa28.74■■■□□ 2.19
LDB1-202ENST00000425280 SLC10A3P09131 477 aa28.74■■■□□ 2.19
LDB1-202ENST00000425280 GTF2H1P32780 548 aa28.74■■■□□ 2.19
LDB1-202ENST00000425280 NLRP11P59045 1033 aaKnown RBP28.74■■■□□ 2.19
LDB1-202ENST00000425280 TXLNBQ8N3L3 684 aa28.74■■■□□ 2.19
LDB1-202ENST00000425280 MSL3Q8N5Y2 521 aaKnown RBP28.74■■■□□ 2.19
LDB1-202ENST00000425280 RNF149Q8NC42 400 aa28.74■■■□□ 2.19
LDB1-202ENST00000425280 ZBTB10Q96DT7 871 aa28.74■■■□□ 2.19
LDB1-202ENST00000425280 COQ4Q9Y3A0 265 aa28.74■■■□□ 2.19
LDB1-202ENST00000425280 ZNF286BP0CG31 522 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 ZNF484Q5JVG2 852 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 IFNL1Q8IU54 200 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 SEMA4DQ92854 862 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 CARD6Q9BX69 1037 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 UBE2TQ9NPD8 197 aaPredicted RBP28.73■■■□□ 2.19
LDB1-202ENST00000425280 PASKQ96RG2 1323 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 A0A0B4J269 797 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 C22orf31O95567 290 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 DLATP10515 647 aaKnown RBP28.73■■■□□ 2.19
LDB1-202ENST00000425280 INSRRP14616 1297 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 ANXA13P27216 316 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 NCBP1Q09161 790 aaKnown RBP28.73■■■□□ 2.19
LDB1-202ENST00000425280 MAP2K5Q13163 448 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 ARHGAP44Q17R89 818 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 IQSEC1Q6DN90 963 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 EFCAB12Q6NXP0 572 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 CRELD2Q6UXH1 353 aaPredicted RBP28.73■■■□□ 2.19
LDB1-202ENST00000425280 RHPN2Q8IUC4 686 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 C16orf70Q9BSU1 422 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 LUC7LQ9NQ29 371 aaKnown RBP28.73■■■□□ 2.19
LDB1-202ENST00000425280 ANKFY1Q9P2R3 1169 aa28.73■■■□□ 2.19
LDB1-202ENST00000425280 DOCK3Q8IZD9 2030 aa28.72■■■□□ 2.19
LDB1-202ENST00000425280 TTLL13PA6NNM8 815 aa28.72■■■□□ 2.19
LDB1-202ENST00000425280 MSCO60682 206 aa28.72■■■□□ 2.19
LDB1-202ENST00000425280 PPFIA4O75335 1185 aa28.72■■■□□ 2.19
LDB1-202ENST00000425280 NOL12Q9UGY1 213 aaKnown RBP eCLIP28.72■■■□□ 2.19
LDB1-202ENST00000425280 V9GYY5 206 aaPredicted RBP28.72■■■□□ 2.19
LDB1-202ENST00000425280 ACOT2P49753 483 aa28.71■■■□□ 2.19
LDB1-202ENST00000425280 CLCN3P51790 818 aa28.71■■■□□ 2.19
LDB1-202ENST00000425280 PSMD6Q15008 389 aa28.71■■■□□ 2.19
LDB1-202ENST00000425280 C17orf99Q6UX52 265 aa28.71■■■□□ 2.19
LDB1-202ENST00000425280 ZPBP2Q6X784 338 aa28.71■■■□□ 2.19
LDB1-202ENST00000425280 ZBTB8OSQ8IWT0 167 aa28.71■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms