RNA–Protein interactions for RNA: ENST00000423567.1

USP49-204, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 2

Gene USP49, Length 752 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-204ENST00000423567 FOXD4L4Q8WXT5 416 aaPredicted RBP12.07□□□□□ -0.48
USP49-204ENST00000423567 FAM193BQ96PV7 902 aaPredicted RBP12.07□□□□□ -0.48
USP49-204ENST00000423567 USP28Q96RU2 1077 aa12.07□□□□□ -0.48
USP49-204ENST00000423567 ADPGKQ9BRR6 497 aa12.07□□□□□ -0.48
USP49-204ENST00000423567 FZD8Q9H461 694 aa12.07□□□□□ -0.48
USP49-204ENST00000423567 CWH43Q9H720 699 aa12.07□□□□□ -0.48
USP49-204ENST00000423567 POLD4Q9HCU8 107 aa12.07□□□□□ -0.48
USP49-204ENST00000423567 KMT5AQ9NQR1 393 aa12.07□□□□□ -0.48
USP49-204ENST00000423567 DAXXQ9UER7 740 aaPredicted RBP12.07□□□□□ -0.48
USP49-204ENST00000423567 PUF60Q9UHX1 559 aaKnown RBP12.07□□□□□ -0.48
USP49-204ENST00000423567 FBXO2Q9UK22 296 aaPredicted RBP12.07□□□□□ -0.48
USP49-204ENST00000423567 COG5Q9UP83 839 aa12.07□□□□□ -0.48
USP49-204ENST00000423567 IPPQ9Y573 584 aa12.07□□□□□ -0.48
USP49-204ENST00000423567 SRPRBQ9Y5M8 271 aaKnown RBP12.07□□□□□ -0.48
USP49-204ENST00000423567 A0A1B0GUA9 196 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 K7ERI5 159 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 ACKR2O00590 384 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 B4GALT5O43286 388 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 ZC3H11AO75152 810 aaKnown RBP eCLIP12.06□□□□□ -0.48
USP49-204ENST00000423567 FGF18O76093 207 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 CSPG5O95196 566 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 NPTXRO95502 500 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 F13A1P00488 732 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 PLCG1P19174 1290 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 NASPP49321 788 aaPredicted RBP12.06□□□□□ -0.48
USP49-204ENST00000423567 SLC12A3P55017 1021 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 KRT17Q04695 432 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 GRIN1Q05586 938 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 RAD51AP2Q09MP3 1159 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 DHX8Q14562 1220 aaKnown RBP12.06□□□□□ -0.48
USP49-204ENST00000423567 KCNT2Q6UVM3 1135 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 LRRC55Q6ZSA7 311 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 GPBP1Q86WP2 473 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 SPPL3Q8TCT6 385 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 MICAL1Q8TDZ2 1067 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 POF1BQ8WVV4 589 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 ATXN2LQ8WWM7 1075 aaKnown RBP12.06□□□□□ -0.48
USP49-204ENST00000423567 HLA-CQ95604 372 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 KIFC3Q9BVG8 833 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 APOL6Q9BWW8 343 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 EIF2AQ9BY44 585 aaKnown RBP12.06□□□□□ -0.48
USP49-204ENST00000423567 CCSER1Q9C0I3 900 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 TBC1D13Q9NVG8 400 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 SPG21Q9NZD8 308 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 HCSTQ9UBK5 93 aa12.06□□□□□ -0.48
USP49-204ENST00000423567 RBM19Q9Y4C8 960 aaKnown RBP12.06□□□□□ -0.48
USP49-204ENST00000423567 MORC2Q9Y6X9 1032 aaPredicted RBP12.06□□□□□ -0.48
USP49-204ENST00000423567 MEIS3P2A8K0S8 358 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 H0YCG3 227 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 SPTLC2O15270 562 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 NCK2O43639 380 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 OFD1O75665 1012 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 NPTX2P47972 431 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 MRPS5P82675 430 aaKnown RBP12.05□□□□□ -0.48
USP49-204ENST00000423567 PLCB3Q01970 1234 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 BMS1Q14692 1282 aaKnown RBP12.05□□□□□ -0.48
USP49-204ENST00000423567 SPECC1Q5M775 1068 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 AGMOQ6ZNB7 445 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 CDR2LQ86X02 465 aaPredicted RBP12.05□□□□□ -0.48
USP49-204ENST00000423567 SMG8Q8ND04 991 aaKnown RBP12.05□□□□□ -0.48
USP49-204ENST00000423567 LARP4BQ92615 738 aaKnown RBP12.05□□□□□ -0.48
USP49-204ENST00000423567 RAD54LQ92698 747 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 SYMPKQ92797 1274 aaKnown RBP12.05□□□□□ -0.48
USP49-204ENST00000423567 TMEM169Q96HH4 297 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 EPSTI1Q96J88 318 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 CCDC113Q9H0I3 377 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 GBP3Q9H0R5 595 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 PRDM6Q9NQX0 595 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 TLR9Q9NR96 1032 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 LARSQ9P2J5 1176 aaKnown RBP12.05□□□□□ -0.48
USP49-204ENST00000423567 STK17AQ9UEE5 414 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 PARP2Q9UGN5 583 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 ODF2LQ9ULJ1 636 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 GIT1Q9Y2X7 761 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 COL4A4P53420 1690 aaPredicted RBP12.05□□□□□ -0.48
USP49-204ENST00000423567 RALGAPA2Q2PPJ7 1873 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 CDH23Q9H251 3354 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 CHD7Q9P2D1 2997 aa12.05□□□□□ -0.48
USP49-204ENST00000423567 SFI1A8K8P3 1242 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 TBCAO75347 108 aaKnown RBP12.04□□□□□ -0.48
USP49-204ENST00000423567 NR1I2O75469 434 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 FAM13AO94988 1023 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 YEATS4O95619 227 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 PLS3P13797 630 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 DDIT3P35638 169 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 STRN3Q13033 797 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 DCAF4L1Q3SXM0 396 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 FOXD4L6Q3SYB3 417 aaPredicted RBP12.04□□□□□ -0.48
USP49-204ENST00000423567 TCEAL5Q5H9L2 206 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 TJAP1Q5JTD0 557 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 RRAGBQ5VZM2 374 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 ATL3Q6DD88 541 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 PDE12Q6L8Q7 609 aaKnown RBP12.04□□□□□ -0.48
USP49-204ENST00000423567 FOXD4L3Q6VB84 417 aaPredicted RBP12.04□□□□□ -0.48
USP49-204ENST00000423567 CCDC73Q6ZRK6 1079 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 EP400NLQ6ZTU2 488 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 DAW1Q8N136 415 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 LINC00301Q8NCQ3 95 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 SPIRE2Q8WWL2 714 aa12.04□□□□□ -0.48
USP49-204ENST00000423567 MRPS27Q92552 414 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms