RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 PPM1AP35813 382 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 NPTX2P47972 431 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 PEX3P56589 373 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 MAPK7Q13164 816 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 PRPF4BQ13523 1007 aaKnown RBP16.35■□□□□ 0.21
LIMS4-201ENST00000413601 TMEM132AQ24JP5 1023 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 SPECC1Q5M775 1068 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 ZNF280BQ86YH2 543 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 SLC39A11Q8N1S5 342 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 KCTD17Q8N5Z5 321 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 SPRYD3Q8NCJ5 442 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 MRPS27Q92552 414 aaKnown RBP16.35■□□□□ 0.21
LIMS4-201ENST00000413601 PABPC5Q96DU9 382 aaKnown RBP16.35■□□□□ 0.21
LIMS4-201ENST00000413601 CLDND1Q9NY35 253 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 DNAJB4Q9UDY4 337 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 LZTS1Q9Y250 596 aa16.35■□□□□ 0.21
LIMS4-201ENST00000413601 ACKR2O00590 384 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 SLC26A4O43511 780 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 DDHD2O94830 711 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 POMCP01189 267 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 GUCY2CP25092 1073 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 EFNA5P52803 228 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 SLC12A3P55017 1021 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 KRT17Q04695 432 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 COL19A1Q14993 1142 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 KARSQ15046 597 aaKnown RBP16.34■□□□□ 0.21
LIMS4-201ENST00000413601 FOXD4L5Q5VV16 416 aaPredicted RBP16.34■□□□□ 0.21
LIMS4-201ENST00000413601 RBM23Q86U06 439 aaKnown RBP16.34■□□□□ 0.21
LIMS4-201ENST00000413601 RASSF8Q8NHQ8 419 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 LRRC15Q8TF66 581 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 FOXD4L4Q8WXT5 416 aaPredicted RBP16.34■□□□□ 0.21
LIMS4-201ENST00000413601 DRC1Q96MC2 740 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 USP28Q96RU2 1077 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 GAD1Q99259 594 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 PDZD7Q9H5P4 517 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 UBN1Q9NPG3 1134 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 KANSL3Q9P2N6 904 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 PUF60Q9UHX1 559 aaKnown RBP16.34■□□□□ 0.21
LIMS4-201ENST00000413601 FBXO2Q9UK22 296 aaPredicted RBP16.34■□□□□ 0.21
LIMS4-201ENST00000413601 XIRP2A4UGR9 3374 aa16.34■□□□□ 0.21
LIMS4-201ENST00000413601 NPHP3-ACAD11A0A0J9YXS1 232 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 ARL5CA6NH57 179 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 H3BQ06 376 aaPredicted RBP16.33■□□□□ 0.2
LIMS4-201ENST00000413601 K7ERI5 159 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 FSCN2O14926 492 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 N4BP3O15049 544 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 LINC01565O15544 149 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 GALTP07902 379 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 PLCG1P19174 1290 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 AKAP5P24588 427 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 LTBRP36941 435 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 MLH1P40692 756 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 NRIP1P48552 1158 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 DMP1Q13316 513 aaPredicted RBP16.33■□□□□ 0.2
LIMS4-201ENST00000413601 DHX8Q14562 1220 aaKnown RBP16.33■□□□□ 0.2
LIMS4-201ENST00000413601 CTC1Q2NKJ3 1217 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 ARSHQ5FYA8 562 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 NT5DC1Q5TFE4 455 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 PLPP4Q5VZY2 271 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 USP49Q70CQ1 688 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 TMEM173Q86WV6 379 aaPredicted RBP16.33■□□□□ 0.2
LIMS4-201ENST00000413601 HACE1Q8IYU2 909 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 ADAMTS19Q8TE59 1207 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 PPP2R3CQ969Q6 453 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 EPSTI1Q96J88 318 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 ZFP42Q96MM3 310 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 CLIC6Q96NY7 704 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 FAM193BQ96PV7 902 aaPredicted RBP16.33■□□□□ 0.2
LIMS4-201ENST00000413601 TIPINQ9BVW5 301 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 KMT5AQ9NQR1 393 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 ENTPD7Q9NQZ7 604 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 BLOC1S4Q9NUP1 217 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 MIOSQ9NXC5 875 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 SRPRBQ9Y5M8 271 aaKnown RBP16.33■□□□□ 0.2
LIMS4-201ENST00000413601 A0A0C4DFX4 3053 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 CITO14578 2027 aa16.33■□□□□ 0.2
LIMS4-201ENST00000413601 PER2O15055 1255 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 SLC16A4O15374 487 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 NCK2O43639 380 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 SLC11A1P49279 550 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 DLX2Q07687 328 aaPredicted RBP16.32■□□□□ 0.2
LIMS4-201ENST00000413601 SLC39A14Q15043 492 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 LEXMQ3ZCV2 418 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 EEF1DP3Q658K8 133 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 PDE12Q6L8Q7 609 aaKnown RBP16.32■□□□□ 0.2
LIMS4-201ENST00000413601 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.32■□□□□ 0.2
LIMS4-201ENST00000413601 BCL7CQ8WUZ0 217 aaPredicted RBP16.32■□□□□ 0.2
LIMS4-201ENST00000413601 TMEM169Q96HH4 297 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 IGSF21Q96ID5 467 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 TCF25Q9BQ70 676 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 CCSER1Q9C0I3 900 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 TLE6Q9H808 572 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 KCND2Q9NZV8 630 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 KLK14Q9P0G3 267 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 PARP2Q9UGN5 583 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 GIT1Q9Y2X7 761 aa16.32■□□□□ 0.2
LIMS4-201ENST00000413601 PHLPP2Q6ZVD8 1323 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 HIDE1A8MVS5 230 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 INPPL1O15357 1258 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 SCNN1GP51170 649 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms