RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 ANKFY1Q9P2R3 1169 aa15.32■□□□□ 0.04
GPNMB-203ENST00000409458 AKT3Q9Y243 479 aa15.32■□□□□ 0.04
GPNMB-203ENST00000409458 LRRC53A6NM62 1247 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 HAS3O00219 553 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 ASAP2O43150 1006 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 EXTL3O43909 919 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 DUSP11O75319 330 aaKnown RBP15.31■□□□□ 0.04
GPNMB-203ENST00000409458 VTNP04004 478 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 PSEN2P49810 448 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 MCCD1P59942 119 aaPredicted RBP15.31■□□□□ 0.04
GPNMB-203ENST00000409458 PTENP60484 403 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 POLR2FP61218 127 aaKnown RBP15.31■□□□□ 0.04
GPNMB-203ENST00000409458 MBTD1Q05BQ5 628 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 CYP24A1Q07973 514 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 PPP3CAQ08209 521 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 PDXDC1Q6P996 788 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 CACNA2D4Q7Z3S7 1137 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 TMTC1Q8IUR5 882 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 PPP1R13BQ96KQ4 1090 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 CHP1Q99653 195 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 DESI2Q9BSY9 194 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 MRPL4Q9BYD3 311 aaKnown RBP15.31■□□□□ 0.04
GPNMB-203ENST00000409458 EDEM3Q9BZQ6 932 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 SIX2Q9NPC8 291 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 NLRC4Q9NPP4 1024 aa15.31■□□□□ 0.04
GPNMB-203ENST00000409458 PCNTO95613 3336 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 ELNP15502 786 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 TMOD1P28289 359 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 NLRP11P59045 1033 aaKnown RBP15.3■□□□□ 0.04
GPNMB-203ENST00000409458 CACNB2Q08289 660 aaPredicted RBP15.3■□□□□ 0.04
GPNMB-203ENST00000409458 MAPK6Q16659 721 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 KLHDC7AQ5VTJ3 777 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 SLFN12LQ6IEE8 588 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 ZPBP2Q6X784 338 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 RRAGAQ7L523 313 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 GPIHBP1Q8IV16 184 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 MFSD14AQ96MC6 490 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 NFKBIZQ9BYH8 718 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 MINDY3Q9H8M7 445 aa15.3■□□□□ 0.04
GPNMB-203ENST00000409458 AJAP1Q9UKB5 411 aaPredicted RBP15.3■□□□□ 0.04
GPNMB-203ENST00000409458 AGO2Q9UKV8 859 aaKnown RBP15.3■□□□□ 0.04
GPNMB-203ENST00000409458 NRCAMQ92823 1304 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 A0A087WZ62 844 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 A0A0B4J269 797 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 RRN3P2A6NIE6 340 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 LRRIQ3A6PVS8 624 aaPredicted RBP15.29■□□□□ 0.04
GPNMB-203ENST00000409458 INO80B-WBP1J3KQ70 363 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 KIAA0391O15091 583 aaKnown RBP15.29■□□□□ 0.04
GPNMB-203ENST00000409458 C6orf222P0C671 652 aaPredicted RBP15.29■□□□□ 0.04
GPNMB-203ENST00000409458 HNRNPH3P31942 346 aaKnown RBP15.29■□□□□ 0.04
GPNMB-203ENST00000409458 MATR3P43243 847 aaKnown RBP eCLIP15.29■□□□□ 0.04
GPNMB-203ENST00000409458 GCLMP48507 274 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 GJA9P57773 515 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 PURAQ00577 322 aaKnown RBP15.29■□□□□ 0.04
GPNMB-203ENST00000409458 HIC1Q14526 733 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 TSR1Q2NL82 804 aaKnown RBP15.29■□□□□ 0.04
GPNMB-203ENST00000409458 ZBTB41Q5SVQ8 909 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 NFRKBQ6P4R8 1299 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 TRIM65Q6PJ69 517 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 PARD3BQ8TEW8 1205 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 CCDC127Q96BQ5 260 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 ACO2Q99798 780 aaKnown RBP15.29■□□□□ 0.04
GPNMB-203ENST00000409458 FDXACB1Q9BRP7 624 aaPredicted RBP15.29■□□□□ 0.04
GPNMB-203ENST00000409458 MSTO1Q9BUK6 570 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 INO80BQ9C086 356 aaPredicted RBP15.29■□□□□ 0.04
GPNMB-203ENST00000409458 FZD8Q9H461 694 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 IFT122Q9HBG6 1241 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 SRRDQ9UH36 339 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 PPP2R2CQ9Y2T4 447 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 FHOD1Q9Y613 1164 aa15.29■□□□□ 0.04
GPNMB-203ENST00000409458 ABLIM1O14639 778 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 SEPT4O43236 478 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 B4GALT5O43286 388 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 N4BP1O75113 896 aaKnown RBP15.28■□□□□ 0.04
GPNMB-203ENST00000409458 IQCF3P0C7M6 154 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 HARSP12081 509 aaKnown RBP15.28■□□□□ 0.04
GPNMB-203ENST00000409458 UCHL3P15374 230 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 CCND3P30281 292 aaPredicted RBP15.28■□□□□ 0.04
GPNMB-203ENST00000409458 PHKA2P46019 1235 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 ACOT2P49753 483 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 WNT7BP56706 349 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 POU5F1BQ06416 359 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 CRELD2Q6UXH1 353 aaPredicted RBP15.28■□□□□ 0.04
GPNMB-203ENST00000409458 IFNLR1Q8IU57 520 aaPredicted RBP15.28■□□□□ 0.04
GPNMB-203ENST00000409458 KIAA0319LQ8IZA0 1049 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 C16orf45Q96MC5 204 aaPredicted RBP15.28■□□□□ 0.04
GPNMB-203ENST00000409458 MAP7D2Q96T17 732 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 KATNAL1Q9BW62 490 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 TMEM117Q9H0C3 514 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 INTS2Q9H0H0 1204 aaKnown RBP15.28■□□□□ 0.04
GPNMB-203ENST00000409458 UPF3AQ9H1J1 476 aaKnown RBP15.28■□□□□ 0.04
GPNMB-203ENST00000409458 KIAA1586Q9HCI6 787 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 TOPORSQ9NS56 1045 aaPredicted RBP15.28■□□□□ 0.04
GPNMB-203ENST00000409458 ZNHIT6Q9NWK9 470 aaKnown RBP15.28■□□□□ 0.04
GPNMB-203ENST00000409458 PLAGL2Q9UPG8 496 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 CENPFP49454 3210 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 MBLAC1A4D2B0 266 aaPredicted RBP15.28■□□□□ 0.04
GPNMB-203ENST00000409458 ZNF233A6NK53 670 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 GPR25O00155 361 aa15.28■□□□□ 0.04
GPNMB-203ENST00000409458 TULP1O00294 542 aaPredicted RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms