RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 EPHX2P34913 555 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 TCF7P36402 384 aaPredicted RBP12.05□□□□□ -0.48
TCOF1-203ENST00000394269 OSTNP61366 133 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 GHRHRQ02643 423 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 MAP1SQ66K74 1059 aaPredicted RBP12.05□□□□□ -0.48
TCOF1-203ENST00000394269 KRT12Q99456 494 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 THAP2Q9H0W7 228 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 MYH11P35749 1972 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 FER1L6Q2WGJ9 1857 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 UBE4BO95155 1302 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 GTPBP10A4D1E9 387 aaKnown RBP12.05□□□□□ -0.48
TCOF1-203ENST00000394269 N4BP1O75113 896 aaKnown RBP12.05□□□□□ -0.48
TCOF1-203ENST00000394269 CSDE1O75534 798 aaKnown RBP12.05□□□□□ -0.48
TCOF1-203ENST00000394269 MYBL2P10244 700 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 JAM2P57087 298 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 PDE4CQ08493 712 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 ALCAMQ13740 583 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 C2CD6Q53TS8 623 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 HDXQ7Z353 690 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 ERO1BQ86YB8 467 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 RPUSD2Q8IZ73 545 aaKnown RBP12.05□□□□□ -0.48
TCOF1-203ENST00000394269 SLC35G2Q8TBE7 412 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 TRAPPC12Q8WVT3 735 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 TATDN2Q93075 761 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 CTTNBP2NLQ9P2B4 639 aa12.05□□□□□ -0.48
TCOF1-203ENST00000394269 ZSCAN5CA6NGD5 496 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-203ENST00000394269 ERICH4A6NGS2 130 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 FTLP02792 175 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-203ENST00000394269 GJB1P08034 283 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 NCKAP1LP55160 1127 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 HSDL1Q3SXM5 330 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 C8orf74Q6P047 294 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 SLC47A2Q86VL8 602 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 SAMD3Q8N6K7 520 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 MSANTD4Q8NCY6 345 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 ASAP3Q8TDY4 903 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 EFCC1Q9HA90 598 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 SSC5DA1L4H1 1573 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 LRRIQ3A6PVS8 624 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-203ENST00000394269 OATP04181 439 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 CCDC172P0C7W6 258 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 POTEJP0CG39 1038 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 CASP8Q14790 479 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 C1orf220Q5T0J3 134 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 KRT39Q6A163 491 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 SLC39A4Q6P5W5 647 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 SLC9A9Q8IVB4 645 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 SLC30A5Q8TAD4 765 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 PARD3BQ8TEW8 1205 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 SLC10A4Q96EP9 437 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 PSME4Q14997 1843 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 MAPTP10636 758 aaKnown RBP12.04□□□□□ -0.48
TCOF1-203ENST00000394269 PPARDQ03181 441 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 NOL9Q5SY16 702 aaKnown RBP12.04□□□□□ -0.48
TCOF1-203ENST00000394269 SV2AQ7L0J3 742 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 MAP4K3Q8IVH8 894 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 ARHGEF26Q96DR7 871 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 FBXO40Q9UH90 709 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 TRPC6Q9Y210 931 aa12.04□□□□□ -0.48
TCOF1-203ENST00000394269 ZBTB41Q5SVQ8 909 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 SPOPLQ6IQ16 392 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 PPP1R13LQ8WUF5 828 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 AGPAT1Q99943 283 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 GPR88Q9GZN0 384 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 PDGFCQ9NRA1 345 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 ZNF233A6NK53 670 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 ATP2A1O14983 1001 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 ARIH2O95376 493 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 NLRP11P59045 1033 aaKnown RBP12.03□□□□□ -0.48
TCOF1-203ENST00000394269 GUCY2DQ02846 1103 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 ZNF211Q13398 564 aaPredicted RBP12.03□□□□□ -0.48
TCOF1-203ENST00000394269 RIOX2Q8IUF8 465 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 LMO3Q8TAP4 145 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 NLRP4Q96MN2 994 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 NRBP2Q9NSY0 501 aa12.03□□□□□ -0.48
TCOF1-203ENST00000394269 BUB1BO60566 1050 aaPredicted RBP12.02□□□□□ -0.48
TCOF1-203ENST00000394269 STBD1O95210 358 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 PRKCIP41743 596 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 PPATQ06203 517 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 IFI16Q16666 785 aaKnown RBP12.02□□□□□ -0.48
TCOF1-203ENST00000394269 HSP90B2PQ58FF3 399 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 SH3D19Q5HYK7 790 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 MEI1Q5TIA1 1274 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 SND1Q7KZF4 910 aaKnown RBP eCLIP12.02□□□□□ -0.48
TCOF1-203ENST00000394269 GPD1LQ8N335 351 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 FBXL13Q8NEE6 735 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 DNERQ8NFT8 737 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 RDM1Q8NG50 284 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 TPCN2Q8NHX9 752 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 PRPF31Q8WWY3 499 aaKnown RBP12.02□□□□□ -0.48
TCOF1-203ENST00000394269 RIN2Q8WYP3 895 aaPredicted RBP12.02□□□□□ -0.48
TCOF1-203ENST00000394269 SPATA33Q96N06 139 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 MMP19Q99542 508 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 RAB20Q9NX57 234 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 RBPJLQ9UBG7 517 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 AGO2Q9UKV8 859 aaKnown RBP12.02□□□□□ -0.48
TCOF1-203ENST00000394269 L1RE1Q9UN81 338 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 SYNGAP1Q96PV0 1343 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 IGSF9BQ9UPX0 1349 aa12.02□□□□□ -0.48
TCOF1-203ENST00000394269 GSTTP1A0A1W2PQM5 241 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms