RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 DRAP1Q14919 205 aaPredicted RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 TBC1D9BQ66K14 1250 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 PLEKHM3Q6ZWE6 761 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 OMA1Q96E52 524 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 TMCC1O94876 653 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 GPATCH4Q5T3I0 446 aaKnown RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.54□□□□□ -0.43e-7■■■■■ 62.1
SYNPO-202ENST00000394243 SLC12A6Q9UHW9 1150 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 MTO1Q9Y2Z2 717 aaKnown RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 ANGPT2O15123 496 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 NR3C1P04150 777 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 PPP4R4Q6NUP7 873 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 ZBTB38Q8NAP3 1195 aaPredicted RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 NOA1Q8NC60 698 aaKnown RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 OTULINQ96BN8 352 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 ARHGEF10O15013 1369 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 FOXN1O15353 648 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 CDH16O75309 829 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 RPS8P62241 208 aaKnown RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 STX3Q13277 289 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 CTTNQ14247 550 aaKnown RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 USP17L2Q6R6M4 530 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 ARHGAP22Q7Z5H3 698 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 C11orf70Q9BRQ4 267 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 NDEL1Q9GZM8 345 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 ABCC2Q92887 1545 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 KDM5DQ9BY66 1539 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 MYBL1P10243 752 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 GCLMP48507 274 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 RUNX1T1Q06455 604 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 FSD1LQ9BXM9 530 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 BHMT2Q9H2M3 363 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 PLEKHA8P1O95397 391 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 CCDC142Q17RM4 750 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 TTC33Q6PID6 262 aaPredicted RBP12.53□□□□□ -0.4
SYNPO-202ENST00000394243 PCSK1NQ9UHG2 260 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 MRC2Q9UBG0 1479 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 A0A1W2PQC6 194 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 ROR1Q01973 937 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 LBRQ14739 615 aaKnown RBP12.53□□□□□ -0.4
SYNPO-202ENST00000394243 ARL13BQ3SXY8 428 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 GPR141Q7Z602 305 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 SPICE1Q8N0Z3 855 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 IL17REQ8NFR9 667 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 ULK4Q96C45 1275 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 SYBUQ9NX95 663 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 IL1RAPL1Q9NZN1 696 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 ASAP2O43150 1006 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 STRNO43815 780 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 CMTM5Q96DZ9 223 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 AKT3Q9Y243 479 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 H0YC42 278 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 XPOTO43592 962 aaKnown RBP12.53□□□□□ -0.4
SYNPO-202ENST00000394243 SOX11P35716 441 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 STX19Q8N4C7 294 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 RFFLQ8WZ73 363 aa12.53□□□□□ -0.4
SYNPO-202ENST00000394243 EML4Q9HC35 981 aaKnown RBP12.53□□□□□ -0.4
SYNPO-202ENST00000394243 ORC4O43929 436 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 KLHL2O95198 593 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 PDE8BO95263 885 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 RBBP7Q16576 425 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 BBS2Q9BXC9 721 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 ASNSD1Q9NWL6 643 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 RAD51CO43502 376 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 LIFRP42702 1097 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 SCNN1DP51172 638 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 LUZP2Q86TE4 346 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 MICU2Q8IYU8 434 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 DDI1Q8WTU0 396 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 TMEM245Q9H330 911 aa12.52□□□□□ -0.4
SYNPO-202ENST00000394243 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.52□□□□□ -0.4
SYNPO-202ENST00000394243 E7ENQ6 273 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 CHRNDQ07001 517 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 NAALADL2Q58DX5 795 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 EXOSC4Q9NPD3 245 aaKnown RBP12.52□□□□□ -0.41
SYNPO-202ENST00000394243 NDUFA13Q9P0J0 144 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 FHOD1Q9Y613 1164 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 TYW5A2RUC4 315 aaKnown RBP12.52□□□□□ -0.41
SYNPO-202ENST00000394243 TTLL1O95922 423 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 RHOT1Q8IXI2 618 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 LCORLQ8N3X6 602 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 ZNF513Q8N8E2 541 aaPredicted RBP12.52□□□□□ -0.41
SYNPO-202ENST00000394243 RFWD2Q8NHY2 731 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 MYCBPAPQ8TBZ2 947 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 GREM2Q9H772 168 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 TMA7Q9Y2S6 64 aaKnown RBP12.52□□□□□ -0.41
SYNPO-202ENST00000394243 GLYCTKQ8IVS8 523 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 ZNF786Q8N393 782 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 DTNAQ9Y4J8 743 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 GRK2P25098 689 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 PEX3P56589 373 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 FAM47CQ5HY64 1035 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 ATL2Q8NHH9 583 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 PIGOQ8TEQ8 1089 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 FAM193BQ96PV7 902 aaPredicted RBP12.52□□□□□ -0.41
SYNPO-202ENST00000394243 MTRQ99707 1265 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 UBAP1Q9NZ09 502 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 SESN1Q9Y6P5 492 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 MYOM2P54296 1465 aa12.52□□□□□ -0.41
SYNPO-202ENST00000394243 TSC22D2O75157 780 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms