RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 CXCL14O95715 111 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 CTSAP10619 480 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 COL9A1P20849 921 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 PRPHP41219 470 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 MCTP1Q6DN14 999 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 ANKRD54Q6NXT1 300 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 SLC27A1Q6PCB7 646 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 BSNDQ8WZ55 320 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 PRIMPOLQ96LW4 560 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 FZD8Q9H461 694 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 C11orf16Q9NQ32 467 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 PRMT7Q9NVM4 692 aaPredicted RBP24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 KIAA1024Q9UPX6 916 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 HES2Q9Y543 173 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 IRAK3Q9Y616 596 aa24.03■■□□□ 1.44
CCDC28B-201ENST00000373602 GPR37L1O60883 481 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 CLASP2O75122 1294 aaKnown RBP24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 ALDH2P05091 517 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 ALADP13716 330 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 GIT2Q14161 759 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 FAM187BQ17R55 369 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 RILPL1Q5EBL4 403 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 TMEM31Q5JXX7 168 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 LLGL2Q6P1M3 1020 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 ZBTB8OSQ8IWT0 167 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 HACE1Q8IYU2 909 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 SNX29Q8TEQ0 813 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 SUSD6Q92537 303 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 GAD1Q99259 594 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 LRFN3Q9BTN0 628 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 VN1R3Q9BXE9 311 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 TRIM6Q9C030 488 aaPredicted RBP24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 C2orf40Q9H1Z8 148 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 S1PR5Q9H228 398 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 BHMT2Q9H2M3 363 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 FAN1Q9Y2M0 1017 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 GIT1Q9Y2X7 761 aa24.02■■□□□ 1.44
CCDC28B-201ENST00000373602 ARL5CA6NH57 179 aa24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 HOXB8P17481 243 aaPredicted RBP24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 MLH1P40692 756 aa24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 IL17AQ16552 155 aa24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 SYCE2Q6PIF2 218 aa24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 CDR2LQ86X02 465 aaPredicted RBP24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 CASP10Q92851 521 aa24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 NXF3Q9H4D5 531 aaKnown RBP24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 DDX19AQ9NUU7 478 aaKnown RBP24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 MIOSQ9NXC5 875 aa24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 STK39Q9UEW8 545 aa24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 HCFC2Q9Y5Z7 792 aa24.01■■□□□ 1.43
CCDC28B-201ENST00000373602 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP24■■□□□ 1.43
CCDC28B-201ENST00000373602 H3BQV1 296 aa24■■□□□ 1.43
CCDC28B-201ENST00000373602 NRP1O14786 923 aa24■■□□□ 1.43
CCDC28B-201ENST00000373602 NPTXRO95502 500 aa24■■□□□ 1.43
CCDC28B-201ENST00000373602 CA8P35219 290 aa24■■□□□ 1.43
CCDC28B-201ENST00000373602 NAMPTP43490 491 aa24■■□□□ 1.43
CCDC28B-201ENST00000373602 DSC1Q08554 894 aa24■■□□□ 1.43
CCDC28B-201ENST00000373602 DTHD1Q6ZMT9 781 aa24■■□□□ 1.43
CCDC28B-201ENST00000373602 COLGALT2Q8IYK4 626 aa24■■□□□ 1.43
CCDC28B-201ENST00000373602 AUTS2Q8WXX7 1259 aa24■■□□□ 1.43
CCDC28B-201ENST00000373602 ZFP42Q96MM3 310 aa24■■□□□ 1.43
CCDC28B-201ENST00000373602 APOL6Q9BWW8 343 aa24■■□□□ 1.43
CCDC28B-201ENST00000373602 PP2D1A8MPX8 630 aa23.99■■□□□ 1.43
CCDC28B-201ENST00000373602 DCXO43602 365 aa23.99■■□□□ 1.43
CCDC28B-201ENST00000373602 SCNN1GP51170 649 aa23.99■■□□□ 1.43
CCDC28B-201ENST00000373602 PPP2R5AQ15172 486 aa23.99■■□□□ 1.43
CCDC28B-201ENST00000373602 KRT79Q5XKE5 535 aa23.99■■□□□ 1.43
CCDC28B-201ENST00000373602 PHF7Q9BWX1 381 aaPredicted RBP23.99■■□□□ 1.43
CCDC28B-201ENST00000373602 CCDC113Q9H0I3 377 aa23.99■■□□□ 1.43
CCDC28B-201ENST00000373602 SMC3Q9UQE7 1217 aa23.99■■□□□ 1.43
CCDC28B-201ENST00000373602 ZMYM2Q9UBW7 1377 aa23.99■■□□□ 1.43
CCDC28B-201ENST00000373602 LOC730098B7Z3J9 87 aa23.98■■□□□ 1.43
CCDC28B-201ENST00000373602 AKAP5P24588 427 aa23.98■■□□□ 1.43
CCDC28B-201ENST00000373602 ATP2C1P98194 919 aaPredicted RBP23.98■■□□□ 1.43
CCDC28B-201ENST00000373602 PTPN14Q15678 1187 aa23.98■■□□□ 1.43
CCDC28B-201ENST00000373602 MAPK6Q16659 721 aa23.98■■□□□ 1.43
CCDC28B-201ENST00000373602 GSTCDQ8NEC7 633 aa23.98■■□□□ 1.43
CCDC28B-201ENST00000373602 KIFAP3Q92845 792 aa23.98■■□□□ 1.43
CCDC28B-201ENST00000373602 MMTAG2Q9BU76 263 aaKnown RBP23.98■■□□□ 1.43
CCDC28B-201ENST00000373602 MARCH5Q9NX47 278 aa23.98■■□□□ 1.43
CCDC28B-201ENST00000373602 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.98■■□□□ 1.43
CCDC28B-201ENST00000373602 FAM86C2PA6NEL3 165 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 TTLL13PA6NNM8 815 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 E9PMD0 336 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 ACKR2O00590 384 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 N4BP3O15049 544 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 PRKCBP05771 671 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 CDC25AP30304 524 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 PRPF4BQ13523 1007 aaKnown RBP23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 CBX2Q14781 532 aaPredicted RBP23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 RNF135Q8IUD6 432 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 TMEM87AQ8NBN3 555 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 DEPTORQ8TB45 409 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 IFT74Q96LB3 600 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 PDZD7Q9H5P4 517 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 POLD4Q9HCU8 107 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 DNM3Q9UQ16 869 aa23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 PRG3Q9Y2Y8 225 aaPredicted RBP23.97■■□□□ 1.43
CCDC28B-201ENST00000373602 OR1G1P47890 313 aa23.96■■□□□ 1.43
CCDC28B-201ENST00000373602 TPRNQ4KMQ1 711 aa23.96■■□□□ 1.43
CCDC28B-201ENST00000373602 APOL5Q9BWW9 433 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms