RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 NDUFV1P49821 464 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 ZRSR1Q15695 479 aaKnown RBP20.32■□□□□ 0.84
CLN3-202ENST00000355477 DUSP6Q16828 381 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 FAM187BQ17R55 369 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 TMC7Q7Z402 723 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 ZBTB8OSQ8IWT0 167 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 IGSF21Q96ID5 467 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 MSLNLQ96KJ4 702 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 PRIMPOLQ96LW4 560 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 GAD1Q99259 594 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 PLIN2Q99541 437 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 KIFC3Q9BVG8 833 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 RUSC1Q9BVN2 902 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 APOL6Q9BWW8 343 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 CCDC113Q9H0I3 377 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 UBN1Q9NPG3 1134 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 PRMT7Q9NVM4 692 aaPredicted RBP20.32■□□□□ 0.84
CLN3-202ENST00000355477 INPPL1O15357 1258 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 AKAP5P24588 427 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 HYIQ5T013 277 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 RINT1Q6NUQ1 792 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 SLC27A1Q6PCB7 646 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 BRAPQ7Z569 592 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 DAW1Q8N136 415 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 DEPTORQ8TB45 409 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 KIFAP3Q92845 792 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 TMEM169Q96HH4 297 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 ZFP42Q96MM3 310 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 VN1R3Q9BXE9 311 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 TRIM6Q9C030 488 aaPredicted RBP20.31■□□□□ 0.84
CLN3-202ENST00000355477 C2orf40Q9H1Z8 148 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 NGRNQ9NPE2 291 aaKnown RBP20.31■□□□□ 0.84
CLN3-202ENST00000355477 KANSL3Q9P2N6 904 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 CD207Q9UJ71 328 aa20.31■□□□□ 0.84
CLN3-202ENST00000355477 BARX2Q9UMQ3 279 aaPredicted RBP20.31■□□□□ 0.84
CLN3-202ENST00000355477 C2orf71A6NGG8 1288 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 MBTPS2O43462 519 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 PRKCBP05771 671 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 LIG1P18858 919 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 MLH1P40692 756 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 KCNC3Q14003 757 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 PPP2R5AQ15172 486 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 MAPK6Q16659 721 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 C1orf186Q6ZWK4 172 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 DDX53Q86TM3 631 aaKnown RBP20.3■□□□□ 0.84
CLN3-202ENST00000355477 VPS52Q8N1B4 723 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 MRPL43Q8N983 215 aaKnown RBP20.3■□□□□ 0.84
CLN3-202ENST00000355477 KHSRPQ92945 711 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLN3-202ENST00000355477 IFT74Q96LB3 600 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 PDZD7Q9H5P4 517 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 FOXD4L1Q9NU39 408 aa20.3■□□□□ 0.84
CLN3-202ENST00000355477 ACKR2O00590 384 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 ALDH2P05091 517 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 PDCP20941 246 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 SYT1P21579 422 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 SCNN1GP51170 649 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 GRIN1Q05586 938 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 MAPK7Q13164 816 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 PRPF4BQ13523 1007 aaKnown RBP20.29■□□□□ 0.84
CLN3-202ENST00000355477 SF3A1Q15459 793 aaKnown RBP20.29■□□□□ 0.84
CLN3-202ENST00000355477 COLGALT2Q8IYK4 626 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 GSTCDQ8NEC7 633 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 AUTS2Q8WXX7 1259 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 INTS4Q96HW7 963 aaKnown RBP20.29■□□□□ 0.84
CLN3-202ENST00000355477 FAM193BQ96PV7 902 aaPredicted RBP20.29■□□□□ 0.84
CLN3-202ENST00000355477 CDCA3Q99618 268 aaPredicted RBP20.29■□□□□ 0.84
CLN3-202ENST00000355477 TMEM175Q9BSA9 504 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 KLK14Q9P0G3 267 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 GIT1Q9Y2X7 761 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 TRIOO75962 3097 aa20.29■□□□□ 0.84
CLN3-202ENST00000355477 K7ELQ4 463 aaPredicted RBP20.28■□□□□ 0.84
CLN3-202ENST00000355477 NRP1O14786 923 aa20.28■□□□□ 0.84
CLN3-202ENST00000355477 HIP1RO75146 1068 aa20.28■□□□□ 0.84
CLN3-202ENST00000355477 CXCL14O95715 111 aa20.28■□□□□ 0.84
CLN3-202ENST00000355477 PEX3P56589 373 aa20.28■□□□□ 0.84
CLN3-202ENST00000355477 COASYQ13057 564 aa20.28■□□□□ 0.84
CLN3-202ENST00000355477 SMC1AQ14683 1233 aaKnown RBP20.28■□□□□ 0.84
CLN3-202ENST00000355477 SMAD2Q15796 467 aaKnown RBP20.28■□□□□ 0.84
CLN3-202ENST00000355477 EEF1DP3Q658K8 133 aa20.28■□□□□ 0.84
CLN3-202ENST00000355477 ZBP1Q9H171 429 aa20.28■□□□□ 0.84
CLN3-202ENST00000355477 FAM50BQ9Y247 325 aa20.28■□□□□ 0.84
CLN3-202ENST00000355477 FAN1Q9Y2M0 1017 aa20.28■□□□□ 0.84
CLN3-202ENST00000355477 CARNS1A5YM72 827 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 SFI1A8K8P3 1242 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 N4BP3O15049 544 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 NPTX2P47972 431 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 EFNA5P52803 228 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 DSC1Q08554 894 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 RESTQ13127 1097 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 SMAD4Q13485 552 aaKnown RBP20.27■□□□□ 0.84
CLN3-202ENST00000355477 TMEM119Q4V9L6 283 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 NT5DC1Q5TFE4 455 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 LLGL2Q6P1M3 1020 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 FAM173BQ6P4H8 233 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 TMEM184AQ6ZMB5 413 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 CABP7Q86V35 215 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 HACE1Q8IYU2 909 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 SYT2Q8N9I0 419 aaPredicted RBP20.27■□□□□ 0.84
CLN3-202ENST00000355477 SMRP1Q8NCR6 262 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 LRRC15Q8TF66 581 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms