RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CCND2P30279 289 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 ZNF211Q13398 564 aaPredicted RBP20.92■□□□□ 0.94
COL9A3-201ENST00000343916 CFAP58Q5T655 872 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 SH2D3CQ8N5H7 860 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 FAM84AQ96KN4 292 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 KREMEN1Q96MU8 473 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 ISCUQ9H1K1 167 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 NEUROG2Q9H2A3 272 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 KMT5AQ9NQR1 393 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 PFASO15067 1338 aa20.91■□□□□ 0.94
COL9A3-201ENST00000343916 COL11A1P12107 1806 aaPredicted RBP20.91■□□□□ 0.94
COL9A3-201ENST00000343916 GOLGA8KD6RF30 607 aa20.91■□□□□ 0.94
COL9A3-201ENST00000343916 RPS12P25398 132 aaKnown RBP20.91■□□□□ 0.94
COL9A3-201ENST00000343916 COPB2P35606 906 aa20.91■□□□□ 0.94
COL9A3-201ENST00000343916 SMTNP53814 917 aa20.91■□□□□ 0.94
COL9A3-201ENST00000343916 PPFIA1Q13136 1202 aa20.91■□□□□ 0.94
COL9A3-201ENST00000343916 SKIDA1Q1XH10 827 aa20.91■□□□□ 0.94
COL9A3-201ENST00000343916 SLC47A2Q86VL8 602 aa20.91■□□□□ 0.94
COL9A3-201ENST00000343916 PCDHB18PQ96TA0 734 aa20.91■□□□□ 0.94
COL9A3-201ENST00000343916 TIPINQ9BVW5 301 aa20.91■□□□□ 0.94
COL9A3-201ENST00000343916 ADGRA3Q8IWK6 1321 aa20.91■□□□□ 0.94
COL9A3-201ENST00000343916 DOCK5Q9H7D0 1870 aa20.91■□□□□ 0.94
COL9A3-201ENST00000343916 TTI1O43156 1089 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 CYP26A1O43174 497 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 ATMINO43313 823 aaPredicted RBP20.9■□□□□ 0.94
COL9A3-201ENST00000343916 IVLP07476 585 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 SWSAP1Q6NVH7 229 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 SLC39A4Q6P5W5 647 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 NOP9Q86U38 636 aaKnown RBP20.9■□□□□ 0.94
COL9A3-201ENST00000343916 MAP4K3Q8IVH8 894 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 SAMD3Q8N6K7 520 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 REPS2Q8NFH8 660 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 WHAMMQ8TF30 809 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 IWS1Q96ST2 819 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 GINM1Q9NU53 330 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 TMOD4Q9NZQ9 345 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 CTTNBP2NLQ9P2B4 639 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 ZNF214Q9UL59 606 aaPredicted RBP20.9■□□□□ 0.94
COL9A3-201ENST00000343916 KIAA1217Q5T5P2 1943 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 TTC19Q6DKK2 380 aaPredicted RBP20.9■□□□□ 0.94
COL9A3-201ENST00000343916 AADACL2Q6P093 401 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 EPS8L1Q8TE68 723 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 ALG3Q92685 438 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 PICK1Q9NRD5 415 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 PARP14Q460N5 1801 aa20.9■□□□□ 0.94
COL9A3-201ENST00000343916 TMEM110-MUSTN1A8MSY1 372 aa20.89■□□□□ 0.94
COL9A3-201ENST00000343916 CCDC188H7C350 402 aa20.89■□□□□ 0.94
COL9A3-201ENST00000343916 KCNA2P16389 499 aa20.89■□□□□ 0.94
COL9A3-201ENST00000343916 TMEM132BQ14DG7 1078 aa20.89■□□□□ 0.94
COL9A3-201ENST00000343916 PARD3BQ8TEW8 1205 aa20.89■□□□□ 0.94
COL9A3-201ENST00000343916 RNPC3Q96LT9 517 aaKnown RBP20.89■□□□□ 0.94
COL9A3-201ENST00000343916 EXOC7Q9UPT5 735 aa20.89■□□□□ 0.94
COL9A3-201ENST00000343916 DAAM1Q9Y4D1 1078 aa20.89■□□□□ 0.94
COL9A3-201ENST00000343916 CHRNB2P17787 502 aa20.89■□□□□ 0.93
COL9A3-201ENST00000343916 ANGEL2Q5VTE6 544 aaKnown RBP20.89■□□□□ 0.93
COL9A3-201ENST00000343916 MREGQ8N565 214 aa20.89■□□□□ 0.93
COL9A3-201ENST00000343916 GPRASP2Q96D09 838 aa20.89■□□□□ 0.93
COL9A3-201ENST00000343916 RSPH14Q9UHP6 348 aa20.89■□□□□ 0.93
COL9A3-201ENST00000343916 ALG6Q9Y672 507 aa20.89■□□□□ 0.93
COL9A3-201ENST00000343916 MAPK13O15264 365 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 DAPK3O43293 454 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 DLATP10515 647 aaKnown RBP20.88■□□□□ 0.93
COL9A3-201ENST00000343916 DCAF15Q66K64 600 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 CCDC60Q8IWA6 550 aaPredicted RBP20.88■□□□□ 0.93
COL9A3-201ENST00000343916 TAS1R2Q8TE23 839 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 POMGNT1Q8WZA1 660 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 NOCTQ9UK39 431 aaKnown RBP20.88■□□□□ 0.93
COL9A3-201ENST00000343916 USP20Q9Y2K6 914 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 RPS6KA5O75582 802 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 STBD1O95210 358 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 MMEP08473 750 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 FLT3P36888 993 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 KRT39Q6A163 491 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 FAM71AQ8IYT1 594 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 NSUN6Q8TEA1 469 aaKnown RBP20.88■□□□□ 0.93
COL9A3-201ENST00000343916 ERVK-5Q9HDB9 667 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 SEPT9Q9UHD8 586 aaPredicted RBP20.88■□□□□ 0.93
COL9A3-201ENST00000343916 WDR81Q562E7 1941 aa20.88■□□□□ 0.93
COL9A3-201ENST00000343916 RLFQ13129 1914 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 DSG3P32926 999 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 MARCKSL1P49006 195 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 SNRPFP62306 86 aaKnown RBP20.87■□□□□ 0.93
COL9A3-201ENST00000343916 OTUD6AQ7L8S5 288 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 RHOT2Q8IXI1 618 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 KRT35Q92764 455 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 TRIM31Q9BZY9 425 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 RABEP2Q9H5N1 569 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 AS3MTQ9HBK9 375 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 DOCK1Q14185 1865 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 ANKRD65E5RJM6 399 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 HNRNPDLO14979 420 aaKnown RBP20.87■□□□□ 0.93
COL9A3-201ENST00000343916 FDX1P10109 184 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 CUL1Q13616 776 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 DHX38Q92620 1227 aaKnown RBP20.87■□□□□ 0.93
COL9A3-201ENST00000343916 SGIP1Q9BQI5 828 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 TRIM51Q9BSJ1 452 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 DPH5Q9H2P9 285 aa20.87■□□□□ 0.93
COL9A3-201ENST00000343916 JPH1Q9HDC5 661 aaPredicted RBP20.87■□□□□ 0.93
COL9A3-201ENST00000343916 A1CFQ9NQ94 594 aaKnown RBP20.87■□□□□ 0.93
COL9A3-201ENST00000343916 XPNPEP1Q9NQW7 623 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms