RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 RABGAP1Q9Y3P9 1069 aa24.08■■□□□ 1.44
TRIM28-202ENST00000341753 ATP8B3O60423 1300 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 GTPBP10A4D1E9 387 aaKnown RBP24.07■■□□□ 1.44
TRIM28-202ENST00000341753 ANKRD62A6NC57 917 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 APBA3O96018 575 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 BMT2Q1RMZ1 405 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 PHLDB3Q6NSJ2 640 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 C15orf41Q9Y2V0 281 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 FTLP02792 175 aaPredicted RBP24.07■■□□□ 1.44
TRIM28-202ENST00000341753 PYGMP11217 842 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 CHRNA5P30532 468 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 CHRNA3P32297 505 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 PPP2R5EQ16537 467 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 NUGGCQ68CJ6 796 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 HHIPL2Q6UWX4 724 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 SUGT1Q9Y2Z0 365 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 PCDHA3Q9Y5H8 950 aa24.07■■□□□ 1.44
TRIM28-202ENST00000341753 CHMP2AO43633 222 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 DIAPH2O60879 1101 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 FAM13AO94988 1023 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 KRT16P08779 473 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 COMTP21964 271 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 JAG1P78504 1218 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 GPATCH4Q5T3I0 446 aaKnown RBP24.06■■□□□ 1.44
TRIM28-202ENST00000341753 LENG9Q96B70 501 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 NAP1L4Q99733 375 aaKnown RBP24.06■■□□□ 1.44
TRIM28-202ENST00000341753 KCNK9Q9NPC2 374 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 USP15Q9Y4E8 981 aaPredicted RBP24.06■■□□□ 1.44
TRIM28-202ENST00000341753 PFASO15067 1338 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 TMEM120BA0PK00 339 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 ALDH1B1P30837 517 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 PDE6CP51160 858 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 DRG2P55039 364 aaKnown RBP24.06■■□□□ 1.44
TRIM28-202ENST00000341753 CERKLQ49MI3 558 aaPredicted RBP24.06■■□□□ 1.44
TRIM28-202ENST00000341753 APEX2Q9UBZ4 518 aa24.06■■□□□ 1.44
TRIM28-202ENST00000341753 CNOT7Q9UIV1 285 aaKnown RBP24.06■■□□□ 1.44
TRIM28-202ENST00000341753 CYP3A7-CYP3A51PA0A087WV96 503 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 CFAP73A6NFT4 308 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 GH1P01241 217 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 CYP3A7P24462 503 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 HOXA13P31271 388 aaPredicted RBP24.05■■□□□ 1.44
TRIM28-202ENST00000341753 RINT1Q6NUQ1 792 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 SIAH1Q8IUQ4 282 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 KLHL29Q96CT2 875 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 MASTLQ96GX5 879 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 EIF2AK1Q9BQI3 630 aaKnown RBP24.05■■□□□ 1.44
TRIM28-202ENST00000341753 ZSWIM1Q9BR11 485 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 TMX4Q9H1E5 349 aaPredicted RBP24.05■■□□□ 1.44
TRIM28-202ENST00000341753 CCDC134Q9H6E4 229 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 SYNGAP1Q96PV0 1343 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 CCDC189A1A4V9 331 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 EIF4E1BA6NMX2 242 aaKnown RBP24.05■■□□□ 1.44
TRIM28-202ENST00000341753 RTN2O75298 545 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 MYL7Q01449 175 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 SLFN13Q68D06 897 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 SEPT14Q6ZU15 432 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 UBL4BQ8N7F7 174 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 ARHGEF2Q92974 986 aaKnown RBP24.05■■□□□ 1.44
TRIM28-202ENST00000341753 HOOK2Q96ED9 719 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 L3MBTL3Q96JM7 780 aaPredicted RBP24.05■■□□□ 1.44
TRIM28-202ENST00000341753 AGPAT1Q99943 283 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 ACP6Q9NPH0 428 aa24.05■■□□□ 1.44
TRIM28-202ENST00000341753 MSH4O15457 936 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 ZNF268Q14587 947 aaPredicted RBP24.04■■□□□ 1.44
TRIM28-202ENST00000341753 TRIM6Q9C030 488 aaPredicted RBP24.04■■□□□ 1.44
TRIM28-202ENST00000341753 ECE2O60344 883 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 MAP2K1Q02750 393 aaPredicted RBP24.04■■□□□ 1.44
TRIM28-202ENST00000341753 TNIP1Q15025 636 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 CRELD2Q6UXH1 353 aaPredicted RBP24.04■■□□□ 1.44
TRIM28-202ENST00000341753 TAOK1Q7L7X3 1001 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 TPH2Q8IWU9 490 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 AKT1S1Q96B36 256 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 ZNF570Q96NI8 536 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 CDC42EP4Q9H3Q1 356 aaKnown RBP24.04■■□□□ 1.44
TRIM28-202ENST00000341753 TDRD3Q9H7E2 651 aaKnown RBP24.04■■□□□ 1.44
TRIM28-202ENST00000341753 FRMPD4Q14CM0 1322 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 CTNNA2P26232 953 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 PDE6BP35913 854 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 RIPK1Q13546 671 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 SEL1L2Q5TEA6 688 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 ERICH1Q86X53 443 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 MBOAT7Q96N66 472 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 UBE2TQ9NPD8 197 aaPredicted RBP24.04■■□□□ 1.44
TRIM28-202ENST00000341753 PCYOX1Q9UHG3 505 aa24.04■■□□□ 1.44
TRIM28-202ENST00000341753 OAS1P00973 400 aaKnown RBP24.03■■□□□ 1.44
TRIM28-202ENST00000341753 RARGP13631 454 aa24.03■■□□□ 1.44
TRIM28-202ENST00000341753 IKQ13123 557 aaPredicted RBP24.03■■□□□ 1.44
TRIM28-202ENST00000341753 SNX1Q13596 522 aa24.03■■□□□ 1.44
TRIM28-202ENST00000341753 AOC3Q16853 763 aa24.03■■□□□ 1.44
TRIM28-202ENST00000341753 COL11A2P13942 1736 aaPredicted RBP24.03■■□□□ 1.44
TRIM28-202ENST00000341753 PODXLO00592 558 aa24.03■■□□□ 1.44
TRIM28-202ENST00000341753 COILP38432 576 aaPredicted RBP24.03■■□□□ 1.44
TRIM28-202ENST00000341753 RPUSD2Q8IZ73 545 aaKnown RBP24.03■■□□□ 1.44
TRIM28-202ENST00000341753 ZDHHC15Q96MV8 337 aa24.03■■□□□ 1.44
TRIM28-202ENST00000341753 DLATP10515 647 aaKnown RBP24.02■■□□□ 1.44
TRIM28-202ENST00000341753 DLG4P78352 724 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 VSTM1Q6UX27 236 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 ARHGEF19Q8IW93 802 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 FITM2Q8N6M3 262 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 RMDN2Q96LZ7 410 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms