RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 PWP1Q13610 501 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 MAPRE1Q15691 268 aaKnown RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 BNIPLQ7Z465 357 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 RAB34Q9BZG1 259 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 TBCCD1Q9NVR7 557 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 GNEQ9Y223 722 aaKnown RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ANGPTL3Q9Y5C1 460 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 EML5Q05BV3 1969 aa3.78□□□□□ -1.81
SYNE1-201ENST00000341594 CYP7A1P22680 504 aa3.78□□□□□ -1.81
SYNE1-201ENST00000341594 ZCWPW2Q504Y3 356 aa3.78□□□□□ -1.81
SYNE1-201ENST00000341594 ZNF354CQ86Y25 554 aa3.78□□□□□ -1.81
SYNE1-201ENST00000341594 AGGF1Q8N302 714 aaeCLIP3.78□□□□□ -1.81
SYNE1-201ENST00000341594 SLC30A5Q8TAD4 765 aa3.78□□□□□ -1.81
SYNE1-201ENST00000341594 C1orf54Q8WWF1 131 aa3.78□□□□□ -1.81
SYNE1-201ENST00000341594 HDAC2Q92769 488 aaKnown RBP3.78□□□□□ -1.81
SYNE1-201ENST00000341594 INPP5DQ92835 1189 aa3.78□□□□□ -1.81
SYNE1-201ENST00000341594 AGXT2Q9BYV1 514 aa3.78□□□□□ -1.81
SYNE1-201ENST00000341594 PARP14Q460N5 1801 aa3.78□□□□□ -1.81
SYNE1-201ENST00000341594 PPIP5K2O43314 1243 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 TMED10P49755 219 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 EPHB4P54760 987 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ENAHQ8N8S7 591 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PANK4Q9NVE7 773 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PCDHA7Q9UN72 937 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 TDRD12Q587J7 1177 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 XAGE3Q8WTP9 111 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 JPH4Q96JJ6 628 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PIH1D1Q9NWS0 290 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 FZD1Q9UP38 647 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ABCC6O95255 1503 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 IRF6O14896 467 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 MAP3K14Q99558 947 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 TLR7Q9NYK1 1049 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 RASAL2Q9UJF2 1139 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 LRCH1Q9Y2L9 728 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 MYLK4Q86YV6 388 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 VPS52Q8N1B4 723 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 MRPS27Q92552 414 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 TMEM87BQ96K49 555 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 FETUBQ9UGM5 382 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 A0A1W2PRQ8 180 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 NLRP12P59046 1061 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 OLR1P78380 273 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 OVGP1Q12889 678 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 CCDC153Q494R4 210 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 HHATQ5VTY9 493 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 LARGE2Q8N3Y3 721 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 MMGT1Q8N4V1 131 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 FAM136AQ96C01 138 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 FRMD8Q9BZ67 464 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 CSRNP2Q9H175 543 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ZNF652Q9Y2D9 606 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 TNRC6CQ9HCJ0 1690 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 SMIM31A0A1B0GVY4 71 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 DDAH1O94760 285 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 SSH3Q8TE77 659 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 MMP19Q99542 508 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 RABL2BQ9UNT1 228 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 CHRM5P08912 532 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 MLLT3P42568 568 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 GCLCP48506 637 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 IQCB1Q15051 598 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 WDR60Q8WVS4 1066 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ACAP3Q96P50 834 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PCDH18Q9HCL0 1135 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 TXLNGQ9NUQ3 528 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ATP8A1Q9Y2Q0 1164 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 WASLO00401 505 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 MSH2P43246 934 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ALFQ53S48 1182 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 RILPQ96NA2 401 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 AGAP3Q96P47 875 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 EPB41L1Q9H4G0 881 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 GMNCA6NCL1 334 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 KRT72Q14CN4 511 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 DHTKD1Q96HY7 919 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 SH3D21A4FU49 640 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ETS2P15036 469 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 LACTB2Q53H82 288 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 MAIP1Q8WWC4 291 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 BRD8Q9H0E9 1235 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 QPCTLQ9NXS2 382 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 LONP1P36776 959 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 MLH1P40692 756 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PLTPP55058 493 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 SH3D19Q5HYK7 790 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PIK3AP1Q6ZUJ8 805 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 TPH2Q8IWU9 490 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 QKIQ96PU8 341 aaKnown RBP eCLIP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 LRRC1Q9BTT6 524 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 VPS37BQ9H9H4 285 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 RICTORQ6R327 1708 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 NMT2O60551 498 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 RPL22P35268 128 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 COBLL1Q53SF7 1204 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PPP1R13BQ96KQ4 1090 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 KLHL11Q9NVR0 708 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ACTL7BQ9Y614 415 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 E9PMD0 336 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PLCD1P51178 756 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms