RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 KIAA1522Q9P206 1035 aaPredicted RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 KCNJ14Q9UNX9 436 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 RNF113AO15541 343 aaKnown RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 KIF5BP33176 963 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 POLE2P56282 527 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 IFI35P80217 286 aaPredicted RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 LMNB2Q03252 620 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 MCL1Q07820 350 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 CCDC15Q0P6D6 951 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 SF3A3Q12874 501 aaKnown RBP eCLIP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 TTLL12Q14166 644 aaPredicted RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 BTNL9Q6UXG8 535 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 SLC15A3Q8IY34 581 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 DIS3L2Q8IYB7 885 aaKnown RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 RNF10Q8N5U6 811 aaKnown RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 PROCA1Q8NCQ7 364 aaPredicted RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 CFAP61Q8NHU2 1237 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 RNF25Q96BH1 459 aaPredicted RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 LRMDAQ9H2I8 198 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 GINM1Q9NU53 330 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 USP20Q9Y2K6 914 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 NYNRINQ9P2P1 1898 aaKnown RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 ALDH2P05091 517 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 GSTA2P09210 222 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 COL6A1P12109 1028 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 DNM2P50570 870 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 USP46P62068 366 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 AKNAD1Q5T1N1 836 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 CACNA2D4Q7Z3S7 1137 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 LONP2Q86WA8 852 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 KBTBD2Q8IY47 623 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 MAGEB6Q8N7X4 407 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 RBBP8NLQ8NC74 664 aaPredicted RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 PIGOQ8TEQ8 1089 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 ARMC5Q96C12 935 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 KLHL29Q96CT2 875 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 TRIM7Q9C029 511 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 TLE6Q9H808 572 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 RNF186Q9NXI6 227 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 USP15Q9Y4E8 981 aaPredicted RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 NUMBLQ9Y6R0 609 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 CPLX1O14810 134 aa6.02□□□□□ -1.44
CSDE1-202ENST00000339438 FLOT1O75955 427 aa6.02□□□□□ -1.44
CSDE1-202ENST00000339438 TJP3O95049 919 aa6.02□□□□□ -1.44
CSDE1-202ENST00000339438 PIM1P11309 404 aaPredicted RBP6.02□□□□□ -1.44
CSDE1-202ENST00000339438 PDE6AP16499 860 aa6.02□□□□□ -1.44
CSDE1-202ENST00000339438 EIF4A3P38919 411 aaKnown RBP6.02□□□□□ -1.44
CSDE1-202ENST00000339438 METAP2P50579 478 aaKnown RBP eCLIP6.02□□□□□ -1.441e-12■□□□□ 10.3
CSDE1-202ENST00000339438 EMP3P54852 163 aa6.02□□□□□ -1.44
CSDE1-202ENST00000339438 SULT2A1Q06520 285 aa6.02□□□□□ -1.44
CSDE1-202ENST00000339438 NAALADL2Q58DX5 795 aa6.02□□□□□ -1.44
CSDE1-202ENST00000339438 IFNL1Q8IU54 200 aa6.02□□□□□ -1.44
CSDE1-202ENST00000339438 FERMT2Q96AC1 680 aa6.02□□□□□ -1.44
CSDE1-202ENST00000339438 TMEM237Q96Q45 408 aa6.02□□□□□ -1.44
CSDE1-202ENST00000339438 OXCT2Q9BYC2 517 aaPredicted RBP6.02□□□□□ -1.44
CSDE1-202ENST00000339438 FAM192AQ9GZU8 254 aa6.02□□□□□ -1.44
CSDE1-202ENST00000339438 PACSIN2Q9UNF0 486 aaPredicted RBP6.02□□□□□ -1.44
CSDE1-202ENST00000339438 TRIOO75962 3097 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 O00370 1275 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 TLR2O60603 784 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 CCDC166P0CW27 439 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 SLC1A4P43007 532 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 RAD23BP54727 409 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 GTF2IP78347 998 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 PPIL2Q13356 520 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 CERKLQ49MI3 558 aaPredicted RBP6.02□□□□□ -1.45
CSDE1-202ENST00000339438 CAVIN4Q5BKX8 364 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 RRAGBQ5VZM2 374 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 ECHDC2Q86YB7 292 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 NCOA7Q8NI08 942 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 TTC8Q8TAM2 541 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 CORO1BQ9BR76 489 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 EXOC1Q9NV70 894 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 MTMR7Q9Y216 660 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 STK38LQ9Y2H1 464 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 TMEM98Q9Y2Y6 226 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 BUB1O43683 1085 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 PALMO75781 387 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 GFPT2O94808 682 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 IFNAR1P17181 557 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 PAFAH1B1P43034 410 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 OCRLQ01968 901 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 GFPT1Q06210 699 aaPredicted RBP6.02□□□□□ -1.45
CSDE1-202ENST00000339438 NAB2Q15742 525 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 Q4G0T1 1027 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 ZNF804AQ7Z570 1209 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 APOBEC3FQ8IUX4 373 aaKnown RBP6.02□□□□□ -1.45
CSDE1-202ENST00000339438 ANKRD13CQ8N6S4 541 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 WDR66Q8TBY9 1149 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 ACTRT1Q8TDG2 376 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 DNAJC9Q8WXX5 260 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 SEC63Q9UGP8 760 aaKnown RBP6.02□□□□□ -1.45
CSDE1-202ENST00000339438 TRIP12Q14669 1992 aaPredicted RBP6.02□□□□□ -1.45
CSDE1-202ENST00000339438 WDFY4Q6ZS81 3184 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 CHD5Q8TDI0 1954 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 GOLGA6L10A6NI86 522 aa6.02□□□□□ -1.45
CSDE1-202ENST00000339438 TRAFD1O14545 582 aaPredicted RBP6.02□□□□□ -1.45
CSDE1-202ENST00000339438 USO1O60763 962 aaKnown RBP6.02□□□□□ -1.45
CSDE1-202ENST00000339438 AOC2O75106 756 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms