RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 TRIM6Q9C030 488 aaPredicted RBP18.03■□□□□ 0.48
LSM1-201ENST00000311351 CCDC113Q9H0I3 377 aa18.03■□□□□ 0.48
LSM1-201ENST00000311351 FZD8Q9H461 694 aa18.03■□□□□ 0.48
LSM1-201ENST00000311351 TLE6Q9H808 572 aa18.03■□□□□ 0.48
LSM1-201ENST00000311351 PRMT7Q9NVM4 692 aaPredicted RBP18.03■□□□□ 0.48
LSM1-201ENST00000311351 PUF60Q9UHX1 559 aaKnown RBP18.03■□□□□ 0.48
LSM1-201ENST00000311351 BARX2Q9UMQ3 279 aaPredicted RBP18.03■□□□□ 0.48
LSM1-201ENST00000311351 DNM3Q9UQ16 869 aa18.03■□□□□ 0.48
LSM1-201ENST00000311351 C5orf42Q9H799 3197 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 K7ELQ4 463 aaPredicted RBP18.02■□□□□ 0.48
LSM1-201ENST00000311351 DDHD2O94830 711 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 PRKCBP05771 671 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 GALTP07902 379 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 DUSP6Q16828 381 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 ARL6IP4Q66PJ3 421 aaKnown RBP18.02■□□□□ 0.48
LSM1-201ENST00000311351 SLC27A1Q6PCB7 646 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 TMC7Q7Z402 723 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 DAW1Q8N136 415 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 CNNM3Q8NE01 707 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 KIFAP3Q92845 792 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 TMEM169Q96HH4 297 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 ZFP42Q96MM3 310 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 GAD1Q99259 594 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 C2orf40Q9H1Z8 148 aa18.02■□□□□ 0.48
LSM1-201ENST00000311351 MYH15Q9Y2K3 1946 aa18.02■□□□□ 0.47
LSM1-201ENST00000311351 A0A1B0GUA9 196 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 HIP1RO75146 1068 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 PDCP20941 246 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 SYT1P21579 422 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 AKAP5P24588 427 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 SCNN1GP51170 649 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 GRIN1Q05586 938 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 PPP2R5AQ15172 486 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 MAPK6Q16659 721 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 FAM187BQ17R55 369 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 TMEM132AQ24JP5 1023 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 HYIQ5T013 277 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 PDE12Q6L8Q7 609 aaKnown RBP18.01■□□□□ 0.47
LSM1-201ENST00000311351 IGSF21Q96ID5 467 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 IFT74Q96LB3 600 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 PRIMPOLQ96LW4 560 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 VN1R3Q9BXE9 311 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 PDZD7Q9H5P4 517 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 CD320Q9NPF0 282 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 CLEC1BQ9P126 229 aa18.01■□□□□ 0.47
LSM1-201ENST00000311351 ARL5CA6NH57 179 aa18■□□□□ 0.47
LSM1-201ENST00000311351 SSBP05455 408 aaKnown RBP eCLIP18■□□□□ 0.47
LSM1-201ENST00000311351 CA8P35219 290 aa18■□□□□ 0.47
LSM1-201ENST00000311351 RESTQ13127 1097 aa18■□□□□ 0.47
LSM1-201ENST00000311351 MAPK7Q13164 816 aa18■□□□□ 0.47
LSM1-201ENST00000311351 PRPF4BQ13523 1007 aaKnown RBP18■□□□□ 0.47
LSM1-201ENST00000311351 SF3A1Q15459 793 aaKnown RBP18■□□□□ 0.47
LSM1-201ENST00000311351 EEF1DP3Q658K8 133 aa18■□□□□ 0.47
LSM1-201ENST00000311351 RINT1Q6NUQ1 792 aa18■□□□□ 0.47
LSM1-201ENST00000311351 FAM173BQ6P4H8 233 aa18■□□□□ 0.47
LSM1-201ENST00000311351 CABP7Q86V35 215 aa18■□□□□ 0.47
LSM1-201ENST00000311351 FAM178BQ8IXR5 827 aa18■□□□□ 0.47
LSM1-201ENST00000311351 AUTS2Q8WXX7 1259 aa18■□□□□ 0.47
LSM1-201ENST00000311351 CDK5RAP3Q96JB5 506 aa18■□□□□ 0.47
LSM1-201ENST00000311351 MSLNLQ96KJ4 702 aa18■□□□□ 0.47
LSM1-201ENST00000311351 NGRNQ9NPE2 291 aaKnown RBP18■□□□□ 0.47
LSM1-201ENST00000311351 UBN1Q9NPG3 1134 aa18■□□□□ 0.47
LSM1-201ENST00000311351 MIOSQ9NXC5 875 aa18■□□□□ 0.47
LSM1-201ENST00000311351 KLK14Q9P0G3 267 aa18■□□□□ 0.47
LSM1-201ENST00000311351 CD207Q9UJ71 328 aa18■□□□□ 0.47
LSM1-201ENST00000311351 ACKR2O00590 384 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 N4BP3O15049 544 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 INPPL1O15357 1258 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 MBTPS2O43462 519 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 PEX3P56589 373 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 RAD51AP2Q09MP3 1159 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 SMC1AQ14683 1233 aaKnown RBP17.99■□□□□ 0.47
LSM1-201ENST00000311351 PUS10Q3MIT2 529 aaKnown RBP17.99■□□□□ 0.47
LSM1-201ENST00000311351 TMEM119Q4V9L6 283 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 LLGL2Q6P1M3 1020 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 C1orf186Q6ZWK4 172 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 VPS52Q8N1B4 723 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 LRRC15Q8TF66 581 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 INTS4Q96HW7 963 aaKnown RBP17.99■□□□□ 0.47
LSM1-201ENST00000311351 FAM193BQ96PV7 902 aaPredicted RBP17.99■□□□□ 0.47
LSM1-201ENST00000311351 CDCA3Q99618 268 aaPredicted RBP17.99■□□□□ 0.47
LSM1-201ENST00000311351 ZBP1Q9H171 429 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 KANSL3Q9P2N6 904 aa17.99■□□□□ 0.47
LSM1-201ENST00000311351 PRG3Q9Y2Y8 225 aaPredicted RBP17.99■□□□□ 0.47
LSM1-201ENST00000311351 C2orf71A6NGG8 1288 aa17.98■□□□□ 0.47
LSM1-201ENST00000311351 NPTX2P47972 431 aa17.98■□□□□ 0.47
LSM1-201ENST00000311351 SMAD4Q13485 552 aaKnown RBP17.98■□□□□ 0.47
LSM1-201ENST00000311351 DDX53Q86TM3 631 aaKnown RBP17.98■□□□□ 0.47
LSM1-201ENST00000311351 HACE1Q8IYU2 909 aa17.98■□□□□ 0.47
LSM1-201ENST00000311351 KHSRPQ92945 711 aaKnown RBP eCLIP17.98■□□□□ 0.47
LSM1-201ENST00000311351 TMEM175Q9BSA9 504 aa17.98■□□□□ 0.47
LSM1-201ENST00000311351 NT5C3AQ9H0P0 336 aa17.98■□□□□ 0.47
LSM1-201ENST00000311351 MARCH5Q9NX47 278 aa17.98■□□□□ 0.47
LSM1-201ENST00000311351 PARP2Q9UGN5 583 aa17.98■□□□□ 0.47
LSM1-201ENST00000311351 GIT1Q9Y2X7 761 aa17.98■□□□□ 0.47
LSM1-201ENST00000311351 CLIC4Q9Y696 253 aa17.98■□□□□ 0.47
LSM1-201ENST00000311351 TRIP11Q15643 1979 aa17.98■□□□□ 0.47
LSM1-201ENST00000311351 PHLPP2Q6ZVD8 1323 aa17.98■□□□□ 0.47
LSM1-201ENST00000311351 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.97■□□□□ 0.47
LSM1-201ENST00000311351 CCDC169A6NNP5 214 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms