RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 PRPF4BQ13523 1007 aaKnown RBP29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 SMC1AQ14683 1233 aaKnown RBP29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 ZRSR1Q15695 479 aaKnown RBP29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 TMEM132AQ24JP5 1023 aa29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 ZNF280BQ86YH2 543 aa29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 IGSF21Q96ID5 467 aa29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 CDK5RAP3Q96JB5 506 aa29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 TMEM175Q9BSA9 504 aa29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 DNAJB4Q9UDY4 337 aa29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 DAXXQ9UER7 740 aaPredicted RBP29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 STK39Q9UEW8 545 aa29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 HES2Q9Y543 173 aa29.2■■■□□ 2.26
CDKN2A-201ENST00000304494 ARL5CA6NH57 179 aa29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 PER2O15055 1255 aa29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 NPTXRO95502 500 aa29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 POMCP01189 267 aa29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 PRKCBP05771 671 aa29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 SRGAP2BP0DMP2 458 aa29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 AFF1P51825 1210 aaKnown RBP29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 TIPINQ9BVW5 301 aa29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 APOL6Q9BWW8 343 aa29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 CCDC113Q9H0I3 377 aa29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 NXF3Q9H4D5 531 aaKnown RBP29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 CD207Q9UJ71 328 aa29.19■■■□□ 2.26
CDKN2A-201ENST00000304494 ACKR2O00590 384 aa29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 N4BP3O15049 544 aa29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 SLC26A4O43511 780 aa29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 ALDH2P05091 517 aa29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 MLH1P40692 756 aa29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 SLC11A1P49279 550 aa29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 DDX53Q86TM3 631 aaKnown RBP29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 FAM178BQ8IXR5 827 aa29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 DRC1Q96MC2 740 aa29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 GAD1Q99259 594 aa29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 RNF39Q9H2S5 420 aa29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 GTF3C3Q9Y5Q9 886 aa29.18■■■□□ 2.26
CDKN2A-201ENST00000304494 ZMYM2Q9UBW7 1377 aa29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 DDHD2O94830 711 aa29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 SMAD4Q13485 552 aaKnown RBP29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 CLUL1Q15846 466 aa29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 RINT1Q6NUQ1 792 aa29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 KCNK18Q7Z418 384 aa29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 TMEM173Q86WV6 379 aaPredicted RBP29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 CDR2LQ86X02 465 aaPredicted RBP29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 MRPL43Q8N983 215 aaKnown RBP29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 MSLNLQ96KJ4 702 aa29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 ADPGKQ9BRR6 497 aa29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 C17orf75Q9HAS0 396 aa29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 CLEC1BQ9P126 229 aa29.17■■■□□ 2.26
CDKN2A-201ENST00000304494 HIDE1A8MVS5 230 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 HIP1RO75146 1068 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 GLP2RO95838 553 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 LIG1P18858 919 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 SYT1P21579 422 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 COASYQ13057 564 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 SF3A1Q15459 793 aaKnown RBP29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 C1orf186Q6ZWK4 172 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 CABP7Q86V35 215 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 VPS52Q8N1B4 723 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 PNMA5Q96PV4 448 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 RUSC1Q9BVN2 902 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 PDZD7Q9H5P4 517 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 POLD4Q9HCU8 107 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 PRKAG3Q9UGI9 489 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 FAN1Q9Y2M0 1017 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 PHLPP2Q6ZVD8 1323 aa29.16■■■□□ 2.26
CDKN2A-201ENST00000304494 MBTPS2O43462 519 aa29.15■■■□□ 2.26
CDKN2A-201ENST00000304494 B4GALT3O60512 393 aa29.15■■■□□ 2.26
CDKN2A-201ENST00000304494 DMP1Q13316 513 aaPredicted RBP29.15■■■□□ 2.26
CDKN2A-201ENST00000304494 GIT2Q14161 759 aa29.15■■■□□ 2.26
CDKN2A-201ENST00000304494 KIFC3Q9BVG8 833 aa29.15■■■□□ 2.26
CDKN2A-201ENST00000304494 ZBP1Q9H171 429 aa29.15■■■□□ 2.26
CDKN2A-201ENST00000304494 BARX2Q9UMQ3 279 aaPredicted RBP29.15■■■□□ 2.26
CDKN2A-201ENST00000304494 C2orf71A6NGG8 1288 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 CCDC169A6NNP5 214 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 NR1I2O75469 434 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 AKAP5P24588 427 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 GUCY2CP25092 1073 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 CA8P35219 290 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 LONP1P36776 959 aaKnown RBP29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 UBA7P41226 1012 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 SCNN1GP51170 649 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 PEX3P56589 373 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 SMAD2Q15796 467 aaKnown RBP29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 SYT2Q8N9I0 419 aaPredicted RBP29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 BCL7CQ8WUZ0 217 aaPredicted RBP29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 CALML4Q96GE6 196 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 ZFP42Q96MM3 310 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 KCND2Q9NZV8 630 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 PARP2Q9UGN5 583 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 KCNG1Q9UIX4 513 aa29.14■■■□□ 2.26
CDKN2A-201ENST00000304494 TTLL13PA6NNM8 815 aa29.13■■■□□ 2.25
CDKN2A-201ENST00000304494 K7ERI5 159 aa29.13■■■□□ 2.25
CDKN2A-201ENST00000304494 NRP1O14786 923 aa29.13■■■□□ 2.25
CDKN2A-201ENST00000304494 CXCL14O95715 111 aa29.13■■■□□ 2.25
CDKN2A-201ENST00000304494 SSBP05455 408 aaKnown RBP eCLIP29.13■■■□□ 2.25
CDKN2A-201ENST00000304494 CTSAP10619 480 aa29.13■■■□□ 2.25
CDKN2A-201ENST00000304494 NPTX2P47972 431 aa29.13■■■□□ 2.25
CDKN2A-201ENST00000304494 TMEM119Q4V9L6 283 aa29.13■■■□□ 2.25
CDKN2A-201ENST00000304494 TMEM184AQ6ZMB5 413 aa29.13■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms