RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 CHKBQ9Y259 395 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 PCDHB13Q9Y5F0 798 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 NHSQ6T4R5 1651 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 TMEM110-MUSTN1A8MSY1 372 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 MARCH6O60337 910 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 COILP38432 576 aaPredicted RBP11.68□□□□□ -0.54
ZNF558-201ENST00000301475 PTDSS1P48651 473 aaKnown RBP11.68□□□□□ -0.54
ZNF558-201ENST00000301475 PEX5P50542 639 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 PSMC6P62333 389 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 ACVR2BQ13705 512 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 SIX1Q15475 284 aaPredicted RBP11.68□□□□□ -0.54
ZNF558-201ENST00000301475 CCDC105Q8IYK2 499 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 C2CD2Q9Y426 696 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 RSPH10B2B2RC85 870 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 PDXKO00764 312 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 PPP1R11O60927 126 aaPredicted RBP11.68□□□□□ -0.54
ZNF558-201ENST00000301475 TTLL1O95922 423 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 RSPH10BP0C881 870 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 PYGMP11217 842 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 HSPA6P17066 643 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 NT5C2P49902 561 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 GIT2Q14161 759 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 CMPK2Q5EBM0 449 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 PPP1R15BQ5SWA1 713 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 TRMT10CQ7L0Y3 403 aaKnown RBP11.68□□□□□ -0.54
ZNF558-201ENST00000301475 LMNTD2Q8IXW0 634 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 PHC3Q8NDX5 983 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 SPOCK2Q92563 424 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 MAGEB18Q96M61 343 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 KIAA1683Q9H0B3 1180 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 DNAJC12Q9UKB3 198 aa11.68□□□□□ -0.54
ZNF558-201ENST00000301475 CDK5RAP2Q96SN8 1893 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 FRMPD4Q14CM0 1322 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 GTPBP10A4D1E9 387 aaKnown RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 ANKRD62A6NC57 917 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 ABLIM1O14639 778 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 RTN3O95197 1032 aaPredicted RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 SP100P23497 879 aaPredicted RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 EPHB2P29323 1055 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 CDK8P49336 464 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 MKRN3Q13064 507 aaKnown RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 LLGL1Q15334 1064 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 CYP1B1Q16678 543 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 SGSM1Q2NKQ1 1148 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 TMEM63BQ5T3F8 832 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 INTS8Q75QN2 995 aaKnown RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 GALNT15Q8N3T1 639 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 ENDOVQ8N8Q3 282 aaKnown RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 UCMAQ8WVF2 138 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 SLC7A6OSQ96CW6 309 aaPredicted RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 BORCS6Q96GS4 357 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 CCDC87Q9NVE4 849 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 TBK1Q9UHD2 729 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 E7ENQ6 273 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 MEIS1O00470 390 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 ENTPD5O75356 428 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 CHRNB2P17787 502 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 SMARCA1P28370 1054 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 RFC5P40937 340 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 CLK2P49760 499 aaKnown RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 POLGP54098 1239 aaPredicted RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 PABPC4Q13310 644 aaKnown RBP eCLIP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 LBRQ14739 615 aaKnown RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 SLC5A9Q2M3M2 681 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 TMEM154Q6P9G4 183 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 CYFIP1Q7L576 1253 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 SRRM1Q8IYB3 904 aaKnown RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.67□□□□□ -0.541e-6■■■■■ 32.6
ZNF558-201ENST00000301475 NEDD1Q8NHV4 660 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 SLC20A1Q8WUM9 679 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 C7orf43Q8WVR3 580 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 TBC1D10AQ9BXI6 508 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 STK33Q9BYT3 514 aa11.67□□□□□ -0.54
ZNF558-201ENST00000301475 TYW1Q9NV66 732 aaKnown RBP11.67□□□□□ -0.54
ZNF558-201ENST00000301475 PASKQ96RG2 1323 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 SLC16A3O15427 465 aaKnown RBP11.66□□□□□ -0.54
ZNF558-201ENST00000301475 CALUO43852 315 aaPredicted RBP11.66□□□□□ -0.54
ZNF558-201ENST00000301475 T-ENOLP0DO92 83 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 ACADSP16219 412 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 KLC1Q07866 573 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 TRAF1Q13077 416 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 RNF220Q5VTB9 566 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 C11orf63Q6NUN7 778 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 MIGA2Q7L4E1 593 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 VSIG1Q86XK7 387 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 AGGF1Q8N302 714 aaeCLIP11.66□□□□□ -0.54
ZNF558-201ENST00000301475 FAM136AQ96C01 138 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 IFT43Q96FT9 208 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 PITPNM3Q9BZ71 974 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 METTL14Q9HCE5 456 aaKnown RBP11.66□□□□□ -0.54
ZNF558-201ENST00000301475 CTTNBP2NLQ9P2B4 639 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 MIF4GDA9UHW6 222 aaKnown RBP11.66□□□□□ -0.54
ZNF558-201ENST00000301475 hCG_1984214I3L0E3 225 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 LRRN2O75325 713 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 CBX6O95503 412 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 COMTP21964 271 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 GCLCP48506 637 aaPredicted RBP11.66□□□□□ -0.54
ZNF558-201ENST00000301475 WDR4P57081 412 aaKnown RBP11.66□□□□□ -0.54
ZNF558-201ENST00000301475 CLUL1Q15846 466 aa11.66□□□□□ -0.54
ZNF558-201ENST00000301475 VPS72Q15906 364 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms