RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 DRAP1Q14919 205 aaPredicted RBP16.4■□□□□ 0.22
SHH-201ENST00000297261 CDKAL1Q5VV42 579 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 SCYL2Q6P3W7 929 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 PPP4R3CPQ6ZMV5 832 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 DAGLBQ8NCG7 672 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 C1orf54Q8WWF1 131 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 WDR11Q9BZH6 1224 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 ISCUQ9H1K1 167 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 PRR12Q9ULL5 1215 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 G3BP2Q9UN86 482 aaKnown RBP16.4■□□□□ 0.22
SHH-201ENST00000297261 ZHX2Q9Y6X8 837 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 FAM187AA6NFU0 413 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 SPDYE2BA6NHP3 402 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 HAUS5O94927 633 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 LMNAP02545 664 aaKnown RBP16.4■□□□□ 0.22
SHH-201ENST00000297261 SPDYE6P0CI01 402 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 PAX7P23759 505 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 CHRNA3P32297 505 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 GPR162Q16538 588 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 TRIM59Q8IWR1 403 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 LRRC34Q8IZ02 419 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 RAD54LQ92698 747 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.4■□□□□ 0.22
SHH-201ENST00000297261 NR3C1P04150 777 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 COPB2P35606 906 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 HSPA9P38646 679 aaKnown RBP16.4■□□□□ 0.22
SHH-201ENST00000297261 XKR9Q5GH70 373 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 AGBL2Q5U5Z8 902 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 ZNF354CQ86Y25 554 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 PYROXD1Q8WU10 500 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 AKT1S1Q96B36 256 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 FAM161BQ96MY7 647 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 DNAJC7Q99615 494 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 TUBB6Q9BUF5 446 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 MYOZ2Q9NPC6 264 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 INTS13Q9NVM9 706 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 ANAPC7Q9UJX3 599 aa16.4■□□□□ 0.22
SHH-201ENST00000297261 ESYT2A0FGR8 921 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 CCND1P24385 295 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 RNF207Q6ZRF8 634 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 POMGNT1Q8WZA1 660 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 ERP27Q96DN0 273 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 AGTP01019 485 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 FTLP02792 175 aaPredicted RBP16.39■□□□□ 0.21
SHH-201ENST00000297261 FGRP09769 529 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 SLC29A2Q14542 456 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 SAMD7Q7Z3H4 446 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 PIGOQ8TEQ8 1089 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 GINM1Q9NU53 330 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 H7C0C1 242 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 ECE1P42892 770 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 ATP5OP48047 213 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 ACER1Q8TDN7 264 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 DIS3Q9Y2L1 958 aaKnown RBP16.39■□□□□ 0.21
SHH-201ENST00000297261 SPEF2Q9C093 1822 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 POTEFA5A3E0 1075 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 DKC1O60832 514 aaKnown RBP eCLIP16.39■□□□□ 0.21
SHH-201ENST00000297261 POTEIP0CG38 1075 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 MX2P20592 715 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 USP11P51784 963 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 SLC8A3P57103 927 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 PLCB4Q15147 1175 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 POTEGQ6S5H5 508 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 POTEEQ6S8J3 1075 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 PRPF38AQ8NAV1 312 aaKnown RBP16.39■□□□□ 0.21
SHH-201ENST00000297261 AGBL3Q8NEM8 1001 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 RFFLQ8WZ73 363 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 SMYD3Q9H7B4 428 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 PARVGQ9HBI0 331 aa16.39■□□□□ 0.21
SHH-201ENST00000297261 COL16A1Q07092 1604 aaPredicted RBP16.38■□□□□ 0.21
SHH-201ENST00000297261 GOLGA8SH3BPF8 625 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 GOLGA8MH3BSY2 632 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 PDE1BQ01064 536 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 HADHQ16836 314 aaKnown RBP16.38■□□□□ 0.21
SHH-201ENST00000297261 EP400NLQ6ZTU2 488 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 LRRC43Q8N309 656 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 GLG1Q92896 1179 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 DLGAP2Q9P1A6 1054 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 GOLGA8IPA6NC78 632 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 GOLGA8JA6NMD2 632 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 SYF2O95926 243 aaKnown RBP16.38■□□□□ 0.21
SHH-201ENST00000297261 EPHB1P54762 984 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 GALCP54803 685 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 GPC5P78333 572 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 CXCL9Q07325 125 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 PRAMEF18Q5VWM3 479 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 TMEM154Q6P9G4 183 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 LDHDQ86WU2 507 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 NCAPG2Q86XI2 1143 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 ELOA2Q8IYF1 753 aaPredicted RBP16.38■□□□□ 0.21
SHH-201ENST00000297261 ALG13Q9NP73 1137 aaKnown RBP16.38■□□□□ 0.21
SHH-201ENST00000297261 A0A087X0T9 212 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 TOM1L1O75674 476 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 FAM228BP0C875 321 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 MYBL1P10243 752 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 GAP43P17677 238 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 GMPSP49915 693 aaPredicted RBP16.38■□□□□ 0.21
SHH-201ENST00000297261 RIOX1Q9H6W3 641 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 L3MBTL1Q9Y468 752 aa16.38■□□□□ 0.21
SHH-201ENST00000297261 SIPA1L3O60292 1781 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms