RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 ARID1BQ8NFD5 2236 aaPredicted RBP12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 AKR1B1P15121 316 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 NLRP11P59045 1033 aaKnown RBP12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 CCZ1BP86790 482 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 CCZ1P86791 482 aaPredicted RBP12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 ITIH4Q14624 930 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 ATP11CQ8NB49 1132 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 FAM162AQ96A26 154 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 ANAPC7Q9UJX3 599 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 CDHR2Q9BYE9 1310 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 ODR4Q5SWX8 454 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 RESP18Q5W5W9 173 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 NOA1Q8NC60 698 aaKnown RBP12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 C3orf20Q8ND61 904 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 RCOR1Q9UKL0 485 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 STX7O15400 261 aaKnown RBP12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 CASP5P51878 434 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 LBRQ14739 615 aaKnown RBP12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 NEDD8Q15843 81 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 E4F1Q66K89 784 aaPredicted RBP12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 UBE2Q1Q7Z7E8 422 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 EFCAB14O75071 495 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 CDH2P19022 906 aaPredicted RBP12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 MAPRE2Q15555 327 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 BTN2A2Q8WVV5 523 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 RERGLQ9H628 205 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 MRPL39Q9NYK5 338 aaKnown RBP12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 MED23Q9ULK4 1368 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 PPIP5K1Q6PFW1 1433 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 TRIM49BA6NDI0 452 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 E7ENQ6 273 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 IZUMO3Q5VZ72 239 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 CLEC4GQ6UXB4 293 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 PASD1Q8IV76 773 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 NDUFA13Q9P0J0 144 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 NOS1P29475 1434 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 ALOX12P18054 663 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 ISLR2Q6UXK2 745 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 LINC00301Q8NCQ3 95 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 OSBPL8Q9BZF1 889 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 STK4Q13043 487 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 SGSM1Q2NKQ1 1148 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 UNC45BQ8IWX7 931 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 C17orf80Q9BSJ5 609 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 RBM12Q9NTZ6 932 aaKnown RBP12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 HESX1Q9UBX0 185 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 TRIM10Q9UDY6 481 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 PRELID1Q9Y255 219 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 INSRP06213 1382 aa12.42□□□□□ -0.42
SHROOM3-201ENST00000296043 UHRF1BP1Q6BDS2 1440 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 CFBP00751 764 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 ALBP02768 609 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 PWP1Q13610 501 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 GDPD5Q8WTR4 605 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 TNFRSF21O75509 655 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 CCNHP51946 323 aaPredicted RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 AARS2Q5JTZ9 985 aaKnown RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 TMEM63BQ5T3F8 832 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 TMEM110Q86TL2 294 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 SCUBE1Q8IWY4 988 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 SLITRK6Q9H5Y7 841 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 CDC25AP30304 524 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 FGD2Q7Z6J4 655 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 SUGP1Q8IWZ8 645 aaKnown RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 DIS3Q9Y2L1 958 aaKnown RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 BAIAP3O94812 1187 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 JAK1P23458 1154 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 CHRNA3P32297 505 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 CDO1Q16878 200 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 P3H1Q32P28 736 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 SYCP2LQ5T4T6 812 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 SYTL1Q8IYJ3 562 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 KCTD17Q8N5Z5 321 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 FANCBQ8NB91 859 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 ZKSCAN4Q969J2 545 aaPredicted RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 CACNA2D2Q9NY47 1150 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 ZNF180Q9UJW8 692 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 PIPSLA2A3N6 862 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 IRS4O14654 1257 aaPredicted RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 LARGE1O95461 756 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 DDI2Q5TDH0 399 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 SCARA5Q6ZMJ2 495 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 C19orf18Q8NEA5 215 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 LARP4BQ92615 738 aaKnown RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 CMTM5Q96DZ9 223 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 HDHD2Q9H0R4 259 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 HPS5Q9UPZ3 1129 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 THOC2Q8NI27 1593 aaKnown RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 GOLGA8TH3BQL2 631 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 KCNA2P16389 499 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 PCIF1Q9H4Z3 704 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 TEX33O43247 280 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 CCNI2Q6ZMN8 369 aaPredicted RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 RASGRP4Q8TDF6 673 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 BYSLQ13895 437 aaKnown RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 THEMIS2Q5TEJ8 643 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 SLFN12Q8IYM2 578 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 MKNK1Q9BUB5 465 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 TUBA8Q9NY65 449 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms