RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ETNK1Q9HBU6 452 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 POTEMA6NI47 508 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 PSMD14O00487 310 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 ZSCAN9O15535 394 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-201ENST00000295550 ARL4AP40617 200 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 MLXIPQ9HAP2 919 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 SLC26A4O43511 780 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 ZNF710Q8N1W2 664 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 LARGE2Q8N3Y3 721 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 CYGBQ8WWM9 190 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 ANKRD36BP1Q96IX9 119 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 ABCF3Q9NUQ8 709 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 MIF4GDA9UHW6 222 aaKnown RBP10.47□□□□□ -0.73
COL6A3-201ENST00000295550 HAUS5O94927 633 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 PAMP19021 973 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 COA7Q96BR5 231 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 SUGCTQ9HAC7 445 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 ATP6V0A4Q9HBG4 840 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 GINM1Q9NU53 330 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 GMNCA6NCL1 334 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 ATP1A1P05023 1023 aaKnown RBP10.47□□□□□ -0.73
COL6A3-201ENST00000295550 CACNB1Q02641 598 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-201ENST00000295550 TXNRD1Q16881 649 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 NIM1KQ8IY84 436 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 GUF1Q8N442 669 aaKnown RBP10.47□□□□□ -0.73
COL6A3-201ENST00000295550 TC2NQ8N9U0 490 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 ANKRD65E5RJM6 399 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 SUGT1Q9Y2Z0 365 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 SOX5P35711 763 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 KCNA1Q09470 495 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 TJAP1Q5JTD0 557 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 ALKBH5Q6P6C2 394 aaKnown RBP10.47□□□□□ -0.73
COL6A3-201ENST00000295550 IFNA8P32881 189 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 DRP2Q13474 957 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 DMC1Q14565 340 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 CYTH1Q15438 398 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 UBE2TQ9NPD8 197 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-201ENST00000295550 POLE3Q9NRF9 147 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 LCMT1Q9UIC8 334 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 ATP8B3O60423 1300 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 EPHB1P54762 984 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 SERPINB1P30740 379 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 NSUN2Q08J23 767 aaKnown RBP eCLIP10.47□□□□□ -0.73
COL6A3-201ENST00000295550 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.47□□□□□ -0.734e-7■■■■■ 58.1
COL6A3-201ENST00000295550 FAM96AQ9H5X1 160 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 BTNL9Q6UXG8 535 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 DPF2Q92785 391 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 CYP4F11Q9HBI6 524 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 USP21Q9UK80 565 aa10.47□□□□□ -0.73
COL6A3-201ENST00000295550 CHD2O14647 1828 aaKnown RBP10.46□□□□□ -0.73
COL6A3-201ENST00000295550 ESRRBO95718 433 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 ANXA13P27216 316 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 MTF1Q14872 753 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 FAM83BQ5T0W9 1011 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 RASSF3Q86WH2 238 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 TEX9Q8N6V9 391 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 PCDHA6Q9UN73 950 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 PCDHA8Q9Y5H6 950 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 KRT38O76015 456 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 KCNA3P22001 575 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 SMARCA1P28370 1054 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 VPS39Q96JC1 886 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 ATP6V1G3Q96LB4 118 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.46□□□□□ -0.73
COL6A3-201ENST00000295550 EDEM3Q9BZQ6 932 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 C10orf88Q9H8K7 445 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 PKD2L2Q9NZM6 624 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 NAALADL2Q58DX5 795 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 WDR75Q8IWA0 830 aaKnown RBP10.46□□□□□ -0.73
COL6A3-201ENST00000295550 SEPT3Q9UH03 358 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 PI4K2BG5E9Z4 385 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 PPIP5K2O43314 1243 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 SLC16A2P36021 539 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 MRPS25P82663 173 aaKnown RBP10.46□□□□□ -0.73
COL6A3-201ENST00000295550 UBE2SQ16763 222 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 GSPT2Q8IYD1 628 aaKnown RBP10.46□□□□□ -0.73
COL6A3-201ENST00000295550 FLAD1Q8NFF5 587 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 IL17RAQ96F46 866 aa10.46□□□□□ -0.73
COL6A3-201ENST00000295550 SLC16A3O15427 465 aaKnown RBP10.46□□□□□ -0.74
COL6A3-201ENST00000295550 KRT27Q7Z3Y8 459 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 THAP11Q96EK4 314 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 RHBDL2Q9NX52 303 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 MINPP1Q9UNW1 487 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 WDR64B1ANS9 1081 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 PSMA2P25787 234 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 GRIN1Q05586 938 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 ZWILCHQ9H900 591 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 ZNF212Q9UDV6 495 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 LZTS3O60299 673 aaPredicted RBP10.46□□□□□ -0.74
COL6A3-201ENST00000295550 TJP3O95049 919 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 CAV1Q03135 178 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 LRRC8EQ6NSJ5 796 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 IL10P22301 178 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 VSNL1P62760 191 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 SLC44A4Q53GD3 710 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 FBXL16Q8N461 479 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 ZNF555Q8NEP9 628 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 B4GALNT2Q8NHY0 566 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 SESN1Q9Y6P5 492 aa10.46□□□□□ -0.74
COL6A3-201ENST00000295550 PIK3C2AO00443 1686 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms