RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 OSTNP61366 133 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 ALCAMQ13740 583 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 KCTD2Q14681 263 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 HSDL1Q3SXM5 330 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 CFAP221Q4G0U5 840 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 BEND6Q5SZJ8 279 aaPredicted RBP12.43□□□□□ -0.42
CUX1-202ENST00000292538 C1orf220Q5T0J3 134 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 MAP1SQ66K74 1059 aaPredicted RBP12.43□□□□□ -0.42
CUX1-202ENST00000292538 SLC47A2Q86VL8 602 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 METTL13Q8N6R0 699 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 MCPH1Q8NEM0 835 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 SLC35G2Q8TBE7 412 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 ASAP3Q8TDY4 903 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 TRAPPC12Q8WVT3 735 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 TATDN2Q93075 761 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 KRT12Q99456 494 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 EFCC1Q9HA90 598 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 DKC1O60832 514 aaKnown RBP eCLIP12.42□□□□□ -0.421e-7■■■■■ 34.5
CUX1-202ENST00000292538 CSDE1O75534 798 aaKnown RBP12.42□□□□□ -0.42
CUX1-202ENST00000292538 OATP04181 439 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 MAPTP10636 758 aaKnown RBP12.42□□□□□ -0.42
CUX1-202ENST00000292538 OAS2P29728 719 aaKnown RBP12.42□□□□□ -0.42
CUX1-202ENST00000292538 ZNF771Q7L3S4 317 aaPredicted RBP12.42□□□□□ -0.42
CUX1-202ENST00000292538 SLC9A9Q8IVB4 645 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 MAP4K3Q8IVH8 894 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 GPR88Q9GZN0 384 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 ZSCAN5CA6NGD5 496 aaPredicted RBP12.42□□□□□ -0.42
CUX1-202ENST00000292538 ATP2A1O14983 1001 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 ARIH2O95376 493 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 C2CD6Q53TS8 623 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 SH3D19Q5HYK7 790 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 ZBTB41Q5SVQ8 909 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 C8orf74Q6P047 294 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 HDXQ7Z353 690 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 MSANTD4Q8NCY6 345 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 SLC30A5Q8TAD4 765 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 PARD3BQ8TEW8 1205 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 PDGFCQ9NRA1 345 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 CTTNBP2NLQ9P2B4 639 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 CEP350Q5VT06 3117 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 DNAH12Q6ZR08 3092 aa12.42□□□□□ -0.42
CUX1-202ENST00000292538 STBD1O95210 358 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 FTLP02792 175 aaPredicted RBP12.41□□□□□ -0.42
CUX1-202ENST00000292538 NLRP11P59045 1033 aaKnown RBP12.41□□□□□ -0.42
CUX1-202ENST00000292538 SPOPLQ6IQ16 392 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 SV2AQ7L0J3 742 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 RIOX2Q8IUF8 465 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 DNERQ8NFT8 737 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 LMO3Q8TAP4 145 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 ARHGEF26Q96DR7 871 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 SLC10A4Q96EP9 437 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 FBXO40Q9UH90 709 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 ATAD5Q96QE3 1844 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 SYNGAP1Q96PV0 1343 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 IGSF9BQ9UPX0 1349 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 FARP2O94887 1054 aaPredicted RBP12.41□□□□□ -0.42
CUX1-202ENST00000292538 CCDC172P0C7W6 258 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 PPATQ06203 517 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 CASP8Q14790 479 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 KRT39Q6A163 491 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 TAS1R3Q7RTX0 852 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 PPP1R13LQ8WUF5 828 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 SPATA33Q96N06 139 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 MMP19Q99542 508 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 RBPJLQ9UBG7 517 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 TRPC6Q9Y210 931 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 ERICH4A6NGS2 130 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 ZNF233A6NK53 670 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 GLRA2P23416 452 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 PRKCIP41743 596 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 ZNF211Q13398 564 aaPredicted RBP12.41□□□□□ -0.42
CUX1-202ENST00000292538 NFIL3Q16649 462 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 MEI1Q5TIA1 1274 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 GPD1LQ8N335 351 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 RDM1Q8NG50 284 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 TPCN2Q8NHX9 752 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 BTBD6Q96KE9 485 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 NLRP4Q96MN2 994 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 AGPAT1Q99943 283 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 PORCNQ9H237 461 aa12.41□□□□□ -0.42
CUX1-202ENST00000292538 A0A0G2JLL6 359 aaPredicted RBP12.4□□□□□ -0.42
CUX1-202ENST00000292538 GSTTP1A0A1W2PQM5 241 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 TTLL13PA6NNM8 815 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 BUB1BO60566 1050 aaPredicted RBP12.4□□□□□ -0.42
CUX1-202ENST00000292538 MMEP08473 750 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 BRD2P25440 801 aaKnown RBP12.4□□□□□ -0.42
CUX1-202ENST00000292538 PPARDQ03181 441 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 PRRT2Q7Z6L0 340 aaPredicted RBP12.4□□□□□ -0.42
CUX1-202ENST00000292538 PRPF31Q8WWY3 499 aaKnown RBP12.4□□□□□ -0.42
CUX1-202ENST00000292538 SENP7Q9BQF6 1050 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 TIPINQ9BVW5 301 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 NRBP2Q9NSY0 501 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 RAB20Q9NX57 234 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 AGO2Q9UKV8 859 aaKnown RBP12.4□□□□□ -0.42
CUX1-202ENST00000292538 WNT7BP56706 349 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 GUCY2DQ02846 1103 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 CYP24A1Q07973 514 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 RHPN2Q8IUC4 686 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 FBXL13Q8NEE6 735 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 RIN2Q8WYP3 895 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms