RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NKIRAS1Q9NYS0 192 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 BCORQ6W2J9 1755 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 CHMP2AO43633 222 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 PHF2O75151 1096 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 UNC5CO95185 931 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 PYGLP06737 847 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 LDHBP07195 334 aaKnown RBP15.41■□□□□ 0.06
SDC1-201ENST00000254351 IL6STP40189 918 aaPredicted RBP15.41■□□□□ 0.06
SDC1-201ENST00000254351 CBWD6Q4V339 395 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 CBWD3Q5JTY5 395 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 CBWD5Q5RIA9 395 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 HEMGNQ9BXL5 484 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 LRRC27Q9C0I9 530 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 ANKIB1Q9P2G1 1089 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 CASZ1Q86V15 1759 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 POC1B-GALNT4F8VUJ3 575 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 LUC7L3O95232 432 aaKnown RBP15.41■□□□□ 0.06
SDC1-201ENST00000254351 CHRNB2P17787 502 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 RANBP1P43487 201 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 RWDD2BP57060 319 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 SEMA3FQ13275 785 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 SETDB1Q15047 1291 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 DPY19L2P1Q6NXN4 242 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 RFWD3Q6PCD5 774 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 SAMD1Q6SPF0 538 aaPredicted RBP15.41■□□□□ 0.06
SDC1-201ENST00000254351 ZC3H18Q86VM9 953 aaKnown RBP15.41■□□□□ 0.06
SDC1-201ENST00000254351 TAB3Q8N5C8 712 aaPredicted RBP15.41■□□□□ 0.06
SDC1-201ENST00000254351 ERVV-1B6SEH8 477 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 FOXN3O00409 490 aaPredicted RBP15.4■□□□□ 0.06
SDC1-201ENST00000254351 SOX5P35711 763 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 OVGP1Q12889 678 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 USP4Q13107 963 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 SEL1L2Q5TEA6 688 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 NAP1L3Q99457 506 aaPredicted RBP15.4■□□□□ 0.06
SDC1-201ENST00000254351 STMN4Q9H169 189 aaPredicted RBP15.4■□□□□ 0.06
SDC1-201ENST00000254351 CARD9Q9H257 536 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 C12orf65Q9H3J6 166 aaKnown RBP15.4■□□□□ 0.06
SDC1-201ENST00000254351 A6NHS1 94 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 BHMG1C9JSJ3 638 aaPredicted RBP15.4■□□□□ 0.06
SDC1-201ENST00000254351 RBM5P52756 815 aaKnown RBP eCLIP15.4■□□□□ 0.063e-7■■■■□ 25.8
SDC1-201ENST00000254351 KRT17Q04695 432 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 RCN2Q14257 317 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 FAM182AQ5T1J6 154 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 ASRGL1Q7L266 308 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 LRRC37BQ96QE4 947 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 TBC1D10AQ9BXI6 508 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 TAOK3Q9H2K8 898 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 RNPEPL1Q9HAU8 725 aa15.4■□□□□ 0.06
SDC1-201ENST00000254351 RASA4BC9J798 803 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 RASA4O43374 803 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 PEX11AO75192 247 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 OAS1P00973 400 aaKnown RBP15.39■□□□□ 0.05
SDC1-201ENST00000254351 CALB2P22676 271 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 PDIA5Q14554 519 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 RRP1BQ14684 758 aaKnown RBP15.39■□□□□ 0.05
SDC1-201ENST00000254351 RGL1Q9NZL6 768 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 NHSQ6T4R5 1651 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 KLHL33A6NCF5 533 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 FAM196BA6NMK8 535 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 BTNL10A8MVZ5 291 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 UBTFL6P0CB48 400 aaPredicted RBP15.39■□□□□ 0.05
SDC1-201ENST00000254351 ZCCHC18P0CG32 403 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 RARGP13631 454 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 FERP16591 822 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 DHX34Q14147 1143 aaKnown RBP15.39■□□□□ 0.05
SDC1-201ENST00000254351 CATSPER3Q86XQ3 398 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 UBL4BQ8N7F7 174 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 DNAJC9Q8WXX5 260 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 SPZ1Q9BXG8 430 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 DHX36Q9H2U1 1008 aaKnown RBP15.39■□□□□ 0.05
SDC1-201ENST00000254351 PCIF1Q9H4Z3 704 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 ZBTB12Q9Y330 459 aaPredicted RBP15.39■□□□□ 0.05
SDC1-201ENST00000254351 FAM187AA6NFU0 413 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 USP17L10C9JJH3 530 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 PPP1R11O60927 126 aaPredicted RBP15.39■□□□□ 0.05
SDC1-201ENST00000254351 TPBGLP0DKB5 382 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 ADCY8P40145 1251 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 SBK1Q52WX2 424 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 FAM182BQ5T319 152 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 CCNJLQ8IV13 435 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 FAM186BQ8IYM0 893 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 GBP7Q8N8V2 638 aaPredicted RBP15.39■□□□□ 0.05
SDC1-201ENST00000254351 CKAP2Q8WWK9 683 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 KAT5Q92993 513 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 TRIM4Q9C037 500 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 DENND2DQ9H6A0 471 aaPredicted RBP15.39■□□□□ 0.05
SDC1-201ENST00000254351 CHKBQ9Y259 395 aa15.39■□□□□ 0.05
SDC1-201ENST00000254351 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.39■□□□□ 0.05
SDC1-201ENST00000254351 COILP38432 576 aaPredicted RBP15.38■□□□□ 0.05
SDC1-201ENST00000254351 RPS6KA3P51812 740 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 PPATQ06203 517 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 GIT2Q14161 759 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 RNF207Q6ZRF8 634 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 SLC30A5Q8TAD4 765 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 STK32AQ8WU08 396 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 PSTPIP2Q9H939 334 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 UBE2TQ9NPD8 197 aaPredicted RBP15.38■□□□□ 0.05
SDC1-201ENST00000254351 CHST7Q9NS84 486 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 NAALADL1Q9UQQ1 740 aa15.38■□□□□ 0.05
SDC1-201ENST00000254351 LOC102724428A0A0B4J2F2 783 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms