RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 BSNDQ8WZ55 320 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 SPOCK2Q92563 424 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 AGPAT1Q99943 283 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 TRPC6Q9Y210 931 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 L3MBTL1Q9Y468 752 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 ZHX2Q9Y6X8 837 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 PFASO15067 1338 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 DHX15O43143 795 aaKnown RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 SP4Q02446 784 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 SPOPLQ6IQ16 392 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 ANKLE1Q8NAG6 615 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 STRA6Q9BX79 667 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 HEMGNQ9BXL5 484 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 TBK1Q9UHD2 729 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 NOCTQ9UK39 431 aaKnown RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 DAAM1Q9Y4D1 1078 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 XIRP2A4UGR9 3374 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 COL4A5P29400 1685 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 QSER1Q2KHR3 1735 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 TMEM253P0C7T8 217 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 PDE6BP35913 854 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 SCTRP47872 440 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 AP3B2Q13367 1082 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 CUL1Q13616 776 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 CEP55Q53EZ4 464 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 SYCP3Q8IZU3 236 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 TAS1R2Q8TE23 839 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 PRCCQ92733 491 aaPredicted RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 PSMD1Q99460 953 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 ZNF646O15015 1829 aaPredicted RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 TNFAIP3P21580 790 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 MMP14P50281 582 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 ZNF131P52739 623 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 FMO1Q01740 532 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 IFFO1Q0D2I5 559 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 ATP13A4Q4VNC1 1196 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 SEZ6Q53EL9 994 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 CCDC137Q6PK04 289 aaKnown RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 B3GNT9Q6UX72 402 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 FUKQ8N0W3 1084 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 DCAF4Q8WV16 495 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 CCT6BQ92526 530 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 ACSF2Q96CM8 615 aaPredicted RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 FAM20AQ96MK3 541 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 ELAC2Q9BQ52 826 aaKnown RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 POLR3CQ9BUI4 534 aaPredicted RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 KCNH7Q9NS40 1196 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 TPX2Q9ULW0 747 aaKnown RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 UTP11Q9Y3A2 253 aaKnown RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 NCANO14594 1321 aa11.52□□□□□ -0.56
USP28-201ENST00000003302 GRIN3BO60391 1043 aa11.52□□□□□ -0.56
USP28-201ENST00000003302 PMS2P54278 862 aa11.52□□□□□ -0.56
USP28-201ENST00000003302 TMEM179Q6ZVK1 233 aa11.52□□□□□ -0.56
USP28-201ENST00000003302 KIF2BQ8N4N8 673 aa11.52□□□□□ -0.56
USP28-201ENST00000003302 CABS1Q96KC9 395 aa11.52□□□□□ -0.56
USP28-201ENST00000003302 CALR3Q96L12 384 aaKnown RBP11.52□□□□□ -0.56
USP28-201ENST00000003302 PNMA3Q9UL41 463 aa11.52□□□□□ -0.56
USP28-201ENST00000003302 AFF2P51816 1311 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 STAT2P52630 851 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 PEX3P56589 373 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 ERMARDQ5T6L9 678 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 SLC39A4Q6P5W5 647 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 PADI6Q6TGC4 694 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 SLC5A5Q92911 643 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 C10orf88Q9H8K7 445 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 ZNF536O15090 1300 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 KCNJ2P63252 427 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 ZKSCAN8Q15776 578 aaPredicted RBP11.52□□□□□ -0.57
USP28-201ENST00000003302 MCTP2Q6DN12 878 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 TBC1D31Q96DN5 1066 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 KLC4Q9NSK0 619 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.52□□□□□ -0.57
USP28-201ENST00000003302 PTPRJQ12913 1337 aa11.52□□□□□ -0.57
USP28-201ENST00000003302 FERP16591 822 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 RNASELQ05823 741 aaKnown RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 TMEM63BQ5T3F8 832 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 RBM26Q5T8P6 1007 aaKnown RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 EXOC3L1Q86VI1 746 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 ERMNQ8TAM6 284 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 RUBCNQ92622 972 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 CD101Q93033 1021 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 XPO6Q96QU8 1125 aaKnown RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 LBHD1Q9BQE6 289 aaPredicted RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 IDI2Q9BXS1 227 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 KIF9Q9HAQ2 790 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 PASD1Q8IV76 773 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 SUGP1Q8IWZ8 645 aaKnown RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 GDAP1Q8TB36 358 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 CPA5Q8WXQ8 436 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 GMCL1Q96IK5 515 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 C12orf65Q9H3J6 166 aaKnown RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 LUC7LQ9NQ29 371 aaKnown RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 SPATA31A6Q5VVP1 1343 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 RGL2O15211 777 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 EIF2AK2P19525 551 aaKnown RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 CYB5D1Q6P9G0 228 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 PABPC3Q9H361 631 aaKnown RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 ASTN2O75129 1339 aaPredicted RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 GOLGA6L10A6NI86 522 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 SLC16A3O15427 465 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms