RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 RHPN2Q8IUC4 686 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 METTL13Q8N6R0 699 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 ZNF397Q8NF99 534 aaPredicted RBP18.4■□□□□ 0.54
CLN3-252ENST00000636907 POMGNT1Q8WZA1 660 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 BAP1Q92560 729 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 EDEM3Q9BZQ6 932 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 GTPBP10A4D1E9 387 aaKnown RBP18.39■□□□□ 0.53
CLN3-252ENST00000636907 TBC1D8O95759 1140 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 PIGRP01833 764 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 GJB1P08034 283 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 SRGAP2CP0DJJ0 459 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 SLC9A1P19634 815 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 GARTP22102 1010 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 FMO5P49326 533 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 APLP1P51693 650 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 DLG4P78352 724 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 SNRNP35Q16560 246 aaKnown RBP18.39■□□□□ 0.53
CLN3-252ENST00000636907 MEA1Q16626 185 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 GBP6Q6ZN66 633 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 CBWD2Q8IUF1 395 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 REM2Q8IYK8 340 aaPredicted RBP18.39■□□□□ 0.53
CLN3-252ENST00000636907 RNF149Q8NC42 400 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 PLEKHO2Q8TD55 490 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 PPP1R13BQ96KQ4 1090 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 FBXL18Q96ME1 805 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 CHP1Q99653 195 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 GANQ9H2C0 597 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 CEP72Q9P209 647 aa18.39■□□□□ 0.53
CLN3-252ENST00000636907 ACTN1P12814 892 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 KLRC1P26715 233 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 PON1P27169 355 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 VAMP7P51809 220 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 IRX5P78411 483 aaPredicted RBP18.38■□□□□ 0.53
CLN3-252ENST00000636907 CAP1Q01518 475 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 CBWD6Q4V339 395 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 CBWD3Q5JTY5 395 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 CBWD5Q5RIA9 395 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 CACNA2D4Q7Z3S7 1137 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 LINC01465Q8N7H1 131 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 DESI2Q9BSY9 194 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 TARS2Q9BW92 718 aaKnown RBP18.38■□□□□ 0.53
CLN3-252ENST00000636907 STYXL1Q9Y6J8 313 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 LRRC53A6NM62 1247 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 MAGEB2O15479 319 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 FLT3LGP49771 235 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 EFNA5P52803 228 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 POLR2FP61218 127 aaKnown RBP18.38■□□□□ 0.53
CLN3-252ENST00000636907 PPFIA1Q13136 1202 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 GRIK4Q16099 956 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 C1orf220Q5T0J3 134 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 PDXDC1Q6P996 788 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 MTHFD1LQ6UB35 978 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 RRAGAQ7L523 313 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 GPD1LQ8N335 351 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 TRPV1Q8NER1 839 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 C16orf45Q96MC5 204 aaPredicted RBP18.38■□□□□ 0.53
CLN3-252ENST00000636907 CCDC113Q9H0I3 377 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 NLRC4Q9NPP4 1024 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 PLCB1Q9NQ66 1216 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 GCNT4Q9P109 453 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 PPP2R2CQ9Y2T4 447 aa18.38■□□□□ 0.53
CLN3-252ENST00000636907 HNRNPH3P31942 346 aaKnown RBP18.37■□□□□ 0.53
CLN3-252ENST00000636907 MCCD1P59942 119 aaPredicted RBP18.37■□□□□ 0.53
CLN3-252ENST00000636907 PRKCZQ05513 592 aa18.37■□□□□ 0.53
CLN3-252ENST00000636907 TFDP1Q14186 410 aa18.37■□□□□ 0.53
CLN3-252ENST00000636907 ZBTB8OSQ8IWT0 167 aa18.37■□□□□ 0.53
CLN3-252ENST00000636907 REXO1L1PQ8IX06 675 aa18.37■□□□□ 0.53
CLN3-252ENST00000636907 ZNF784Q8NCA9 323 aaPredicted RBP18.37■□□□□ 0.53
CLN3-252ENST00000636907 TRIB2Q92519 343 aa18.37■□□□□ 0.53
CLN3-252ENST00000636907 ZNF668Q96K58 619 aaPredicted RBP18.37■□□□□ 0.53
CLN3-252ENST00000636907 ZBTB45Q96K62 511 aaPredicted RBP18.37■□□□□ 0.53
CLN3-252ENST00000636907 NLRP4Q96MN2 994 aa18.37■□□□□ 0.53
CLN3-252ENST00000636907 HAPLN2Q9GZV7 340 aa18.37■□□□□ 0.53
CLN3-252ENST00000636907 C2orf40Q9H1Z8 148 aa18.37■□□□□ 0.53
CLN3-252ENST00000636907 SIX2Q9NPC8 291 aa18.37■□□□□ 0.53
CLN3-252ENST00000636907 ZNHIT6Q9NWK9 470 aaKnown RBP18.37■□□□□ 0.53
CLN3-252ENST00000636907 Q9Y3F1 56 aa18.37■□□□□ 0.53
CLN3-252ENST00000636907 ASAP2O43150 1006 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 CCP110O43303 1012 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 ZSCAN12O43309 604 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 MSCO60682 206 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 OFD1O75665 1012 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 F2P00734 622 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 AKR1A1P14550 325 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 MYL7Q01449 175 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 SP3Q02447 781 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 PPP3CAQ08209 521 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 DNTTIP2Q5QJE6 756 aaKnown RBP18.36■□□□□ 0.53
CLN3-252ENST00000636907 MARCH8Q5T0T0 291 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 KLHDC7AQ5VTJ3 777 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 KAT2BQ92831 832 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 MFSD14AQ96MC6 490 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 AP5M1Q9H0R1 490 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 PLAGL2Q9UPG8 496 aa18.36■□□□□ 0.53
CLN3-252ENST00000636907 TTLL13PA6NNM8 815 aa18.35■□□□□ 0.53
CLN3-252ENST00000636907 EXTL3O43909 919 aa18.35■□□□□ 0.53
CLN3-252ENST00000636907 PRKCBP05771 671 aa18.35■□□□□ 0.53
CLN3-252ENST00000636907 CPT1AP50416 773 aa18.35■□□□□ 0.53
CLN3-252ENST00000636907 BEX3Q00994 111 aa18.35■□□□□ 0.53
CLN3-252ENST00000636907 MFSD14CQ5VZR4 134 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms