RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ARL8AQ96BM9 186 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 RXFP1Q9HBX9 757 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 OLFML3Q9NRN5 406 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 UTP6Q9NYH9 597 aaKnown RBP9.46□□□□□ -0.9
VCL-206ENST00000623461 SUCLA2Q9P2R7 463 aaPredicted RBP9.46□□□□□ -0.9
VCL-206ENST00000623461 SUN2Q9UH99 717 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 WDR64B1ANS9 1081 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 KDSRQ06136 332 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 GPS1Q13098 491 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 TRIP10Q15642 601 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 USPL1Q5W0Q7 1092 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 RBBP8NLQ8NC74 664 aaPredicted RBP9.46□□□□□ -0.9
VCL-206ENST00000623461 PUS3Q9BZE2 481 aaKnown RBP9.46□□□□□ -0.9
VCL-206ENST00000623461 CAPN9O14815 690 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 FTLP02792 175 aaPredicted RBP9.46□□□□□ -0.9
VCL-206ENST00000623461 ANKRD40Q6AI12 368 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 CASKIN2Q8WXE0 1202 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 THTPAQ9BU02 230 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 IP6K2Q9UHH9 426 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 DDX20Q9UHI6 824 aaKnown RBP9.46□□□□□ -0.9
VCL-206ENST00000623461 TBX22Q9Y458 520 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 AP4S1Q9Y587 144 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 NEURL4Q96JN8 1562 aa9.46□□□□□ -0.9
VCL-206ENST00000623461 B2RBV5 119 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 ICA1Q05084 483 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 FLOT2Q14254 428 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 KNOP1Q1ED39 458 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 CRELD2Q6UXH1 353 aaPredicted RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 CYB5R4Q7L1T6 521 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 ADCK1Q86TW2 530 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 MTRQ99707 1265 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 BLOC1S6Q9UL45 172 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 RTCBQ9Y3I0 505 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 ATXN2Q99700 1313 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 SERPINB1P30740 379 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 RAP1GDS1P52306 607 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 NLRP11P59045 1033 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 IGBP1P78318 339 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 RSPH10B2B2RC85 870 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 HNRNPDLO14979 420 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 RSPH10BP0C881 870 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 DEFA1P59665 94 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 DEFA3P59666 94 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 CDK17Q00537 523 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 DRAP1Q14919 205 aaPredicted RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 DPP8Q6V1X1 898 aaPredicted RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 SNRNP27Q8WVK2 155 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 PABPC3Q9H361 631 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 RTN2O75298 545 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 RHOBTB3O94955 611 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 CALB1P05937 261 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 USP11P51784 963 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 ALDH18A1P54886 795 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 DGKHQ86XP1 1220 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 JAMLQ86YT9 394 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 ANKRD36BP1Q96IX9 119 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 STRBPQ96SI9 672 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 TRIM51Q9BSJ1 452 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 AIPL1Q9NZN9 384 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 LRCH1Q9Y2L9 728 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 SASH3O75995 380 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 FAM200BP0CF97 657 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 DDR1Q08345 913 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 SURF1Q15526 300 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 IRGCQ6NXR0 463 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 PAWRQ96IZ0 340 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 FIS1Q9Y3D6 152 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 PALLDQ8WX93 1383 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 AP5Z1O43299 807 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 ZNF189O75820 626 aaPredicted RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 PLEKHA8P1O95397 391 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 SMARCA1P28370 1054 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 TRIM72Q6ZMU5 477 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 SETD3Q86TU7 594 aaPredicted RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 LCORLQ8N3X6 602 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 DNAJC7Q99615 494 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 PCIF1Q9H4Z3 704 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 KMT5AQ9NQR1 393 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 ADAM22Q9P0K1 906 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 KRR1Q13601 381 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 HIF1AQ16665 826 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 TRIM16LQ309B1 348 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 LRRC47Q8N1G4 583 aaKnown RBP9.45□□□□□ -0.9
VCL-206ENST00000623461 PPM1NQ8N819 430 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 MCUQ8NE86 351 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 SNX25Q9H3E2 840 aa9.45□□□□□ -0.9
VCL-206ENST00000623461 CCDC195A0A1B0GUA6 201 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 SMAPO00193 183 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 CDC27P30260 824 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 CACNA2D1P54289 1103 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 KIRREL3Q8IZU9 778 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 OXER1Q8TDS5 423 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 EME1Q96AY2 570 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 CCDC17Q96LX7 622 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 TRAPPC9Q96Q05 1148 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 ZBTB18Q99592 522 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 HEMGNQ9BXL5 484 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 CCSER1Q9C0I3 900 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 CCDC90BQ9GZT6 254 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 AGPAT5Q9NUQ2 364 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms