RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 POTEMA6NI47 508 aa21.2■□□□□ 0.98
CCDC28A-203ENST00000617445 OR52Z1P0C646 297 aa21.2■□□□□ 0.98
CCDC28A-203ENST00000617445 SPATA31C1P0DKV0 1188 aa21.2■□□□□ 0.98
CCDC28A-203ENST00000617445 MUTP22033 750 aa21.2■□□□□ 0.98
CCDC28A-203ENST00000617445 PBX3P40426 434 aa21.2■□□□□ 0.98
CCDC28A-203ENST00000617445 SMC1AQ14683 1233 aaKnown RBP21.2■□□□□ 0.98
CCDC28A-203ENST00000617445 NOTUMQ6P988 496 aa21.2■□□□□ 0.98
CCDC28A-203ENST00000617445 CATSPER3Q86XQ3 398 aa21.2■□□□□ 0.98
CCDC28A-203ENST00000617445 MRPL43Q8N983 215 aaKnown RBP21.2■□□□□ 0.98
CCDC28A-203ENST00000617445 KHSRPQ92945 711 aaKnown RBP eCLIP21.2■□□□□ 0.986e-7■■■■□ 21.8
CCDC28A-203ENST00000617445 ST18O60284 1047 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 ZC3H11AO75152 810 aaKnown RBP eCLIP21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 NCLP19338 710 aaKnown RBP21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 RPA1P27694 616 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 TECP42680 631 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 KCNC3Q14003 757 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 GIT2Q14161 759 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 ZNF174Q15697 407 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 TTC38Q5R3I4 469 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 AGMOQ6ZNB7 445 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 MCPH1Q8NEM0 835 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 PIGOQ8TEQ8 1089 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 NRDE2Q9H7Z3 1164 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 RSAD1Q9HA92 442 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 BARX2Q9UMQ3 279 aaPredicted RBP21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 INPP5FQ9Y2H2 1132 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 STK24Q9Y6E0 443 aa21.19■□□□□ 0.98
CCDC28A-203ENST00000617445 INO80B-WBP1J3KQ70 363 aa21.18■□□□□ 0.98
CCDC28A-203ENST00000617445 GALTP07902 379 aa21.18■□□□□ 0.98
CCDC28A-203ENST00000617445 HOXB8P17481 243 aaPredicted RBP21.18■□□□□ 0.98
CCDC28A-203ENST00000617445 U2AF2P26368 475 aaKnown RBP eCLIP21.18■□□□□ 0.98
CCDC28A-203ENST00000617445 LONRF3Q496Y0 759 aa21.18■□□□□ 0.98
CCDC28A-203ENST00000617445 UBXN11Q5T124 520 aa21.18■□□□□ 0.98
CCDC28A-203ENST00000617445 DDX53Q86TM3 631 aaKnown RBP21.18■□□□□ 0.98
CCDC28A-203ENST00000617445 IGSF21Q96ID5 467 aa21.18■□□□□ 0.98
CCDC28A-203ENST00000617445 LRFN3Q9BTN0 628 aa21.18■□□□□ 0.98
CCDC28A-203ENST00000617445 UPF2Q9HAU5 1272 aaKnown RBP21.18■□□□□ 0.98
CCDC28A-203ENST00000617445 DAXXQ9UER7 740 aaPredicted RBP21.18■□□□□ 0.98
CCDC28A-203ENST00000617445 MEIS3P2A8K0S8 358 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 HIDE1A8MVS5 230 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 DCXO43602 365 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 TSPAN1O60635 241 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 GLRA2P23416 452 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 CAPSQ13938 189 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 HAUS3Q68CZ6 603 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 HACE1Q8IYU2 909 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 VN1R2Q8NFZ6 395 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 ASAP3Q8TDY4 903 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 FAM193BQ96PV7 902 aaPredicted RBP21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 TMEM175Q9BSA9 504 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 CSRNP2Q9H175 543 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 IRAK3Q9Y616 596 aa21.17■□□□□ 0.98
CCDC28A-203ENST00000617445 C2orf71A6NGG8 1288 aa21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 NT5C1B-RDH14C9J2C7 533 aa21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 MED24O75448 989 aa21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 ALDH2P05091 517 aa21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 ITGA4P13612 1032 aa21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 FXR2P51116 673 aaKnown RBP eCLIP21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 MBTD1Q05BQ5 628 aa21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 PDIA5Q14554 519 aa21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 VPS52Q8N1B4 723 aa21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 CASP10Q92851 521 aa21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 RAB34Q9BZG1 259 aa21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 POLR3FQ9H1D9 316 aaPredicted RBP21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 USP15Q9Y4E8 981 aaPredicted RBP21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 C5orf42Q9H799 3197 aa21.16■□□□□ 0.98
CCDC28A-203ENST00000617445 INPPL1O15357 1258 aa21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 USO1O60763 962 aaKnown RBP21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 CXCL14O95715 111 aa21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 ANKRD54Q6NXT1 300 aa21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 TMEM87AQ8NBN3 555 aa21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 SMG8Q8ND04 991 aaKnown RBP21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 SUSD6Q92537 303 aa21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 PRIMPOLQ96LW4 560 aa21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 PHF7Q9BWX1 381 aaPredicted RBP21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 ZBP1Q9H171 429 aa21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 ARIH1Q9Y4X5 557 aaPredicted RBP21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 IPPQ9Y573 584 aa21.15■□□□□ 0.98
CCDC28A-203ENST00000617445 LAD1O00515 517 aa21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 CTSAP10619 480 aa21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 AMHR2Q16671 573 aa21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 TPRNQ4KMQ1 711 aa21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 ZNF280BQ86YH2 543 aa21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 C4orf32Q8N8J7 132 aa21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 TRIM6Q9C030 488 aaPredicted RBP21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 GBP3Q9H0R5 595 aa21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 S1PR5Q9H228 398 aa21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 C11orf16Q9NQ32 467 aa21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 FAN1Q9Y2M0 1017 aa21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 GIT1Q9Y2X7 761 aa21.14■□□□□ 0.97
CCDC28A-203ENST00000617445 ZMYM2Q9UBW7 1377 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 A0A1B0GUA9 196 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 ARHGEF35A5YM69 484 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 PRR33A8MZF0 331 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 LOC730098B7Z3J9 87 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 ARF4P18085 180 aaPredicted RBP21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 CYP11B2P19099 503 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 SLC11A1P49279 550 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 MCM2P49736 904 aa21.13■□□□□ 0.97
CCDC28A-203ENST00000617445 FAM187BQ17R55 369 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms