RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 RNF216Q9NWF9 866 aaPredicted RBP11.09□□□□□ -0.63
UPF1-213ENST00000601981 ABHD14A-ACY1A0A1B0GW23 586 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 CCDC169A6NNP5 214 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 GOLGA6L6A8MZA4 724 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 PPP1R3GB7ZBB8 358 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 INO80B-WBP1J3KQ70 363 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 PTMAP06454 111 aaKnown RBP11.08□□□□□ -0.64
UPF1-213ENST00000601981 PLS3P13797 630 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 IDEP14735 1019 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 ZSCAN20P17040 1043 aaPredicted RBP11.08□□□□□ -0.64
UPF1-213ENST00000601981 GAP43P17677 238 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 GLRA2P23416 452 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 BMP8BP34820 402 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 PPP1R2P41236 205 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 EFNA5P52803 228 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 NFX1Q12986 1120 aaKnown RBP11.08□□□□□ -0.64
UPF1-213ENST00000601981 CAPSQ13938 189 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 LPIN1Q14693 890 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 PLEKHG4Q58EX7 1191 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 CATSPER4Q7RTX7 472 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 IFNLR1Q8IU57 520 aaPredicted RBP11.08□□□□□ -0.64
UPF1-213ENST00000601981 KSR1Q8IVT5 923 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 CCDC65Q8IXS2 484 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 MYCT1Q8N699 235 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 ASAP3Q8TDY4 903 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 DDX12PQ92771 950 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 GDF15Q99988 308 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 HSD3B7Q9H2F3 369 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 KMT5AQ9NQR1 393 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 PRMT7Q9NVM4 692 aaPredicted RBP11.08□□□□□ -0.64
UPF1-213ENST00000601981 SEL1LQ9UBV2 794 aa11.08□□□□□ -0.64
UPF1-213ENST00000601981 PVALEFA0A1B0GWK0 134 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 DENND3A2RUS2 1198 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 ZBBXA8MT70 800 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 TPM3P06753 285 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 ACRP10323 421 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 CD44P16070 742 aaKnown RBP11.07□□□□□ -0.64
UPF1-213ENST00000601981 AXLP30530 894 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 CD52P31358 61 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 PEX3P56589 373 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 PTENP60484 403 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 ASIC1P78348 528 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 GIT2Q14161 759 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 MBTPS1Q14703 1052 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 MAPK6Q16659 721 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 TMEM132AQ24JP5 1023 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 KMT5BQ4FZB7 885 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 COBLL1Q53SF7 1204 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 ARSHQ5FYA8 562 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 CDCA2Q69YH5 1023 aaPredicted RBP11.07□□□□□ -0.64
UPF1-213ENST00000601981 STXBP4Q6ZWJ1 553 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 UNC13DQ70J99 1090 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 ZNF365Q70YC5 407 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 DYMQ7RTS9 669 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 DBF4BQ8NFT6 615 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 SPIRE2Q8WWL2 714 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 ZNF668Q96K58 619 aaPredicted RBP11.07□□□□□ -0.64
UPF1-213ENST00000601981 PRIMPOLQ96LW4 560 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 EXOC1Q9NV70 894 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 RWDD2AQ9UIY3 292 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 PADI3Q9ULW8 664 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 ST3GAL5Q9UNP4 418 aa11.07□□□□□ -0.64
UPF1-213ENST00000601981 NOC2LQ9Y3T9 749 aaKnown RBP11.07□□□□□ -0.64
UPF1-213ENST00000601981 NPHP3-ACAD11A0A0J9YXS1 232 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 A0A1W2PPC1 479 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 MYMKA6NI61 221 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 K7ENM7 598 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 K7ERI5 159 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 CBFA2T2O43439 604 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 AMHP03971 560 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 ZNF18P17022 549 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 NPTX2P47972 431 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 ZNF131P52739 623 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 FANCCQ00597 558 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 CACNB1Q02641 598 aaPredicted RBP11.06□□□□□ -0.64
UPF1-213ENST00000601981 STRN3Q13033 797 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 PAK1Q13153 545 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 MAPK7Q13164 816 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 STIM1Q13586 685 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 TMEM240Q5SV17 173 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 SPATA1Q5VX52 437 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 CHRDL2Q6WN34 429 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 OTOP2Q7RTS6 562 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 APBB1IPQ7Z5R6 666 aaPredicted RBP11.06□□□□□ -0.64
UPF1-213ENST00000601981 FAM228AQ86W67 206 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 FAM178BQ8IXR5 827 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 ADSSL1Q8N142 457 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 TMEM40Q8WWA1 233 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 HERVK_113Q902F9 699 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 RNPC3Q96LT9 517 aaKnown RBP11.06□□□□□ -0.64
UPF1-213ENST00000601981 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.06□□□□□ -0.648e-8■■□□□ 13.3
UPF1-213ENST00000601981 CDHR5Q9HBB8 845 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 IFT122Q9HBG6 1241 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 ERVK-5Q9HDB9 667 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 CHST12Q9NRB3 414 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 C1orf112Q9NSG2 853 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 PANK4Q9NVE7 773 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 CTNND2Q9UQB3 1225 aa11.06□□□□□ -0.64
UPF1-213ENST00000601981 PIN4Q9Y237 131 aaKnown RBP11.06□□□□□ -0.64
UPF1-213ENST00000601981 NFE2L3Q9Y4A8 694 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms