RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 RAD54LQ92698 747 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 PGBD4Q96DM1 585 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 CASD1Q96PB1 797 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 C17orf75Q9HAS0 396 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 DAXXQ9UER7 740 aaPredicted RBP18.61■□□□□ 0.57
TRIM28-215ENST00000601150 MTCH2Q9Y6C9 303 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 CDH23Q9H251 3354 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 CNTNAP2Q9UHC6 1331 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 CCDC169A6NNP5 214 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 B4GALT5O43286 388 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 BRD1O95696 1058 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 PRKCBP05771 671 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 PEX3P56589 373 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 RAD51AP2Q09MP3 1159 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 DMP1Q13316 513 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-215ENST00000601150 DHX8Q14562 1220 aaKnown RBP18.6■□□□□ 0.57
TRIM28-215ENST00000601150 SPOUT1Q5T280 376 aaKnown RBP18.6■□□□□ 0.57
TRIM28-215ENST00000601150 RRAGBQ5VZM2 374 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 MRPL10Q7Z7H8 261 aaKnown RBP18.6■□□□□ 0.57
TRIM28-215ENST00000601150 GPBP1Q86WP2 473 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 LRRC43Q8N309 656 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 CNNM3Q8NE01 707 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 HELQQ8TDG4 1101 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 RSPH1Q8WYR4 309 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 LPPQ93052 612 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 C11orf84Q9BUA3 381 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-215ENST00000601150 KIFC3Q9BVG8 833 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 PLVAPQ9BX97 442 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 CCDC113Q9H0I3 377 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 LMCD1Q9NZU5 365 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 STK17AQ9UEE5 414 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 CFAP45Q9UL16 551 aa18.6■□□□□ 0.57
TRIM28-215ENST00000601150 PLXNA4Q9HCM2 1894 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 LIG1P18858 919 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 NPTX2P47972 431 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 PRPF4BQ13523 1007 aaKnown RBP18.59■□□□□ 0.57
TRIM28-215ENST00000601150 MCM6Q14566 821 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 LONRF3Q496Y0 759 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 ARSHQ5FYA8 562 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 GLB1LQ6UWU2 654 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 KCNG4Q8TDN1 519 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 LARP4BQ92615 738 aaKnown RBP18.59■□□□□ 0.57
TRIM28-215ENST00000601150 EIF2AQ9BY44 585 aaKnown RBP18.59■□□□□ 0.57
TRIM28-215ENST00000601150 KMT5AQ9NQR1 393 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 AAASQ9NRG9 546 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 TYW1Q9NV66 732 aaKnown RBP18.59■□□□□ 0.57
TRIM28-215ENST00000601150 KCNG1Q9UIX4 513 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 ZDHHC9Q9Y397 364 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 ATG2AQ2TAZ0 1938 aa18.59■□□□□ 0.57
TRIM28-215ENST00000601150 PRRC2BQ5JSZ5 2229 aaKnown RBP18.58■□□□□ 0.57
TRIM28-215ENST00000601150 PHLPP2Q6ZVD8 1323 aa18.58■□□□□ 0.57
TRIM28-215ENST00000601150 NPHP3-ACAD11A0A0J9YXS1 232 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 A0A1B0GUA9 196 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 SFI1A8K8P3 1242 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 K7ERI5 159 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 ACKR2O00590 384 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 CUTAO60888 179 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 PLS3P13797 630 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 NCLP19338 710 aaKnown RBP18.58■□□□□ 0.56
TRIM28-215ENST00000601150 DDIT3P35638 169 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 DNM1Q05193 864 aaKnown RBP18.58■□□□□ 0.56
TRIM28-215ENST00000601150 TMEM132AQ24JP5 1023 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 NAALADL2Q58DX5 795 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 SLC27A1Q6PCB7 646 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 CCDC73Q6ZRK6 1079 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 MICALL1Q8N3F8 863 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 P2RX5Q93086 422 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 MRPL9Q9BYD2 267 aaKnown RBP18.58■□□□□ 0.56
TRIM28-215ENST00000601150 TRIM6Q9C030 488 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-215ENST00000601150 CWH43Q9H720 699 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 ODF2LQ9ULJ1 636 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 RBM19Q9Y4C8 960 aaKnown RBP18.58■□□□□ 0.56
TRIM28-215ENST00000601150 PCDHB12Q9Y5F1 795 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 TCHHQ07283 1943 aa18.58■□□□□ 0.56
TRIM28-215ENST00000601150 TDRD15B5MCY1 1934 aaKnown RBP18.57■□□□□ 0.56
TRIM28-215ENST00000601150 MEIS3P2A8K0S8 358 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 N4BP3O15049 544 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 KRT18P05783 430 aaKnown RBP18.57■□□□□ 0.56
TRIM28-215ENST00000601150 ITGA4P13612 1032 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 LAG3P18627 525 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 CCDC85BQ15834 202 aaPredicted RBP18.57■□□□□ 0.56
TRIM28-215ENST00000601150 PTPROQ16827 1216 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 AGMOQ6ZNB7 445 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 LRRC55Q6ZSA7 311 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 CDR2LQ86X02 465 aaPredicted RBP18.57■□□□□ 0.56
TRIM28-215ENST00000601150 HACE1Q8IYU2 909 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 SMG8Q8ND04 991 aaKnown RBP18.57■□□□□ 0.56
TRIM28-215ENST00000601150 SPIRE2Q8WWL2 714 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 PPM1EQ8WY54 764 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 MRPL38Q96DV4 380 aaKnown RBP18.57■□□□□ 0.56
TRIM28-215ENST00000601150 REEP2Q9BRK0 252 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 NTPCRQ9BSD7 190 aaKnown RBP18.57■□□□□ 0.56
TRIM28-215ENST00000601150 TMEM134Q9H6X4 195 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 RSAD1Q9HA92 442 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 UBN1Q9NPG3 1134 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 ARHGAP28Q9P2N2 729 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 HCSTQ9UBK5 93 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 IPPQ9Y573 584 aa18.57■□□□□ 0.56
TRIM28-215ENST00000601150 TTLL13PA6NNM8 815 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 OFD1O75665 1012 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 379.9 ms