RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 LPIN1Q14693 890 aa8.9□□□□□ -0.98
SMAD4-204ENST00000586253 KIZQ2M2Z5 673 aa8.9□□□□□ -0.98
SMAD4-204ENST00000586253 FOXD4L6Q3SYB3 417 aaPredicted RBP8.9□□□□□ -0.98
SMAD4-204ENST00000586253 ODR4Q5SWX8 454 aa8.9□□□□□ -0.98
SMAD4-204ENST00000586253 FOXD4L3Q6VB84 417 aaPredicted RBP8.9□□□□□ -0.98
SMAD4-204ENST00000586253 ZNF365Q70YC5 407 aa8.9□□□□□ -0.98
SMAD4-204ENST00000586253 SYT2Q8N9I0 419 aaPredicted RBP8.9□□□□□ -0.98
SMAD4-204ENST00000586253 SEPT8Q92599 483 aa8.9□□□□□ -0.98
SMAD4-204ENST00000586253 CCDC97Q96F63 343 aaPredicted RBP8.9□□□□□ -0.98
SMAD4-204ENST00000586253 CLIC6Q96NY7 704 aa8.9□□□□□ -0.98
SMAD4-204ENST00000586253 PNMA5Q96PV4 448 aa8.9□□□□□ -0.98
SMAD4-204ENST00000586253 TIPINQ9BVW5 301 aa8.9□□□□□ -0.98
SMAD4-204ENST00000586253 IFIH1Q9BYX4 1025 aaKnown RBP8.9□□□□□ -0.98
SMAD4-204ENST00000586253 XPNPEP1Q9NQW7 623 aa8.9□□□□□ -0.98
SMAD4-204ENST00000586253 CCDC39Q9UFE4 941 aa8.9□□□□□ -0.98
SMAD4-204ENST00000586253 COL4A3BPQ9Y5P4 624 aa8.9□□□□□ -0.98
SMAD4-204ENST00000586253 MICAL3Q7RTP6 2002 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 A0A087WWV3 80 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 E9PMD0 336 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 SPTLC1O15269 473 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 USO1O60763 962 aaKnown RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 DARSP14868 501 aaKnown RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 PLCG1P19174 1290 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 EIF4BP23588 611 aaKnown RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 ARL2P36404 184 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 ME1P48163 572 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 SLC12A3P55017 1021 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 LAMTOR4Q0VGL1 99 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 IKBKEQ14164 716 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 KARSQ15046 597 aaKnown RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 PCBP1Q15365 356 aaKnown RBP eCLIP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 SHHQ15465 462 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 ZRSR1Q15695 479 aaKnown RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 LRIT3Q3SXY7 679 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 C9orf50Q5SZB4 431 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 AXDND1Q5T1B0 1012 aaPredicted RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 CCDC73Q6ZRK6 1079 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 OTOP2Q7RTS6 562 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 KCNK18Q7Z418 384 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 TRIM46Q7Z4K8 759 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 RHPN2Q8IUC4 686 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 DBF4BQ8NFT6 615 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 RASSF8Q8NHQ8 419 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 LEO1Q8WVC0 666 aaPredicted RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 PRPF31Q8WWY3 499 aaKnown RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 TMEM143Q96AN5 459 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 EPSTI1Q96J88 318 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 SPATA32Q96LK8 384 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 RNPC3Q96LT9 517 aaKnown RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 OSMRQ99650 979 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 FTHL17Q9BXU8 183 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 NFKBIZQ9BYH8 718 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 GCOM2Q9BZD3 368 aaPredicted RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 INO80BQ9C086 356 aaPredicted RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 STK17AQ9UEE5 414 aa8.89□□□□□ -0.99
SMAD4-204ENST00000586253 RBM19Q9Y4C8 960 aaKnown RBP8.89□□□□□ -0.99
SMAD4-204ENST00000586253 LAMA3Q16787 3333 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 GPR182O15218 404 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 RPS6KA5O75582 802 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 PLA2G4BP0C869 781 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 NCLP19338 710 aaKnown RBP8.88□□□□□ -0.99
SMAD4-204ENST00000586253 LORP23490 312 aaPredicted RBP8.88□□□□□ -0.99
SMAD4-204ENST00000586253 GUCY2CP25092 1073 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 CD52P31358 61 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 PAK2Q13177 524 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 TFDP1Q14186 410 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 SPECC1Q5M775 1068 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 RRAGBQ5VZM2 374 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 ADALQ6DHV7 355 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 RINT1Q6NUQ1 792 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 C1orf186Q6ZWK4 172 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 USP49Q70CQ1 688 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 SRGAP1Q7Z6B7 1085 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 PHOSPHO2Q8TCD6 241 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 TMEM40Q8WWA1 233 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 LARP4BQ92615 738 aaKnown RBP8.88□□□□□ -0.99
SMAD4-204ENST00000586253 RAD54LQ92698 747 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 KIFAP3Q92845 792 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 DRC1Q96MC2 740 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 NLRP4Q96MN2 994 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 SCLT1Q96NL6 688 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 PYM1Q9BRP8 204 aaKnown RBP8.88□□□□□ -0.99
SMAD4-204ENST00000586253 OSBPL7Q9BZF2 842 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 POLR3FQ9H1D9 316 aaPredicted RBP8.88□□□□□ -0.99
SMAD4-204ENST00000586253 AGO3Q9H9G7 860 aaKnown RBP8.88□□□□□ -0.99
SMAD4-204ENST00000586253 C17orf75Q9HAS0 396 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 IFT122Q9HBG6 1241 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 ERVK-5Q9HDB9 667 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 BLOC1S4Q9NUP1 217 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 CHMP5Q9NZZ3 219 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 KCNG1Q9UIX4 513 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 PADI3Q9ULW8 664 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 PCDHA7Q9UN72 937 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 GINS2Q9Y248 185 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 NOC2LQ9Y3T9 749 aaKnown RBP8.88□□□□□ -0.99
SMAD4-204ENST00000586253 TRIOBPQ9H2D6 2365 aa8.88□□□□□ -0.99
SMAD4-204ENST00000586253 A0A087WZ62 844 aa8.87□□□□□ -0.99
SMAD4-204ENST00000586253 SFPQP23246 707 aaKnown RBP eCLIP8.87□□□□□ -0.99
SMAD4-204ENST00000586253 GLRA2P23416 452 aa8.87□□□□□ -0.99
SMAD4-204ENST00000586253 NAMPTP43490 491 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms