RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	IPCEF1	Q8WWN9	437 aa	Predicted RBP	12.54	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	CUL5	Q93034	780 aa		12.54	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	NOX5	Q96PH1	765 aa		12.54	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	C6orf203	Q9P0P8	240 aa	Predicted RBP	12.54	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	NYAP2	Q9P242	653 aa		12.54	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	ZNF233	A6NK53	670 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	MYO1F	O00160	1098 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	KCNK3	O14649	394 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	ZBTB39	O15060	712 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	PABPC4	Q13310	644 aa	Known RBP eCLIP	12.53	□□□□□ -0.4	2e-7	■■■□□ 15.2
CDK5RAP3-231	ENST00000584063	PRR16	Q569H4	304 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	HERC4	Q5GLZ8	1057 aa	Predicted RBP	12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	KIAA1755	Q5JYT7	1200 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	FAM26F	Q5R3K3	315 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	IQCE	Q6IPM2	695 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	GJB7	Q6PEY0	223 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	OLFML1	Q6UWY5	402 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	GUF1	Q8N442	669 aa	Known RBP	12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	MMGT1	Q8N4V1	131 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	CCDC89	Q8N998	374 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	CASKIN2	Q8WXE0	1202 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	SH3KBP1	Q96B97	665 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	SGIP1	Q9BQI5	828 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	TSGA10	Q9BZW7	698 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	PPAN	Q9NQ55	473 aa	Known RBP	12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	FBXO28	Q9NVF7	368 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	HERC5	Q9UII4	1024 aa	Known RBP	12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	ZBTB21	Q9ULJ3	1066 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	RPS6KA5	O75582	802 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	FOS	P01100	380 aa	Predicted RBP	12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	KRT18	P05783	430 aa	Known RBP	12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	PLA2G4B	P0C869	781 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	MKRN4P	Q13434	485 aa	Predicted RBP	12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	ARSH	Q5FYA8	562 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	CFAP58	Q5T655	872 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	RNF187	Q5TA31	235 aa	Predicted RBP	12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	TCERG1L	Q5VWI1	586 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	ILDR2	Q71H61	639 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	TADA2B	Q86TJ2	420 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	SLC39A13	Q96H72	371 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	RPGRIP1	Q96KN7	1286 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	NELL2	Q99435	816 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	ABCG4	Q9H172	646 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	MAGEF1	Q9HAY2	307 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	LRRC4C	Q9HCJ2	640 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	HACL1	Q9UJ83	578 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	MRPL42	Q9Y6G3	142 aa	Known RBP	12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	MYH7B	A7E2Y1	1941 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	CNTNAP1	P78357	1384 aa		12.53	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	RAD51C	O43502	376 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	ERLIN2	O94905	339 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	SLC9A1	P19634	815 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	HOXC13	P31276	330 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	EPS15	P42566	896 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	EPHB4	P54760	987 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	PPFIA1	Q13136	1202 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	KSR1	Q8IVT5	923 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	VPS52	Q8N1B4	723 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	SCFD1	Q8WVM8	642 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	CLIP3	Q96DZ5	547 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	FHDC1	Q9C0D6	1143 aa	Predicted RBP	12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	DEFB129	Q9H1M3	183 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	STK17A	Q9UEE5	414 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	CD2AP	Q9Y5K6	639 aa		12.52	□□□□□ -0.4
CDK5RAP3-231	ENST00000584063	hCG_1984214	I3L0E3	225 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	EIF3H	O15372	352 aa	Known RBP eCLIP	12.52	□□□□□ -0.41	2e-7	■■□□□ 11.6
CDK5RAP3-231	ENST00000584063	TCP1	P17987	556 aa	Known RBP	12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	MRPL12	P52815	198 aa	Known RBP	12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	KLHL30	Q0D2K2	578 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	LLGL1	Q15334	1064 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ZCWPW2	Q504Y3	356 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	DCAF17	Q5H9S7	520 aa	Predicted RBP	12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CEP85L	Q5SZL2	805 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	EFCAB13	Q8IY85	973 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	LILRB2	Q8N423	598 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	PPM1E	Q8WY54	764 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ZNF341	Q9BYN7	854 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ANO3	Q9BYT9	981 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CLIC5	Q9NZA1	410 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ACAD8	Q9UKU7	415 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	PLIN4	Q96Q06	1357 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	ZNF541	Q9H0D2	1346 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	C19orf81	C9J6K1	198 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CEP104	O60308	925 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CFAP221	Q4G0U5	840 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	NBPF12	Q5TAG4	269 aa	Predicted RBP	12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	TRMT1L	Q7Z2T5	733 aa	Known RBP	12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	APPL2	Q8NEU8	664 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	TMC2	Q8TDI7	906 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	RMDN2	Q96LZ7	410 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	PHACTR1	Q9C0D0	580 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	AJAP1	Q9UKB5	411 aa	Predicted RBP	12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CAPN7	Q9Y6W3	813 aa		12.52	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	PVALEF	A0A1B0GWK0	134 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	FAM86B1	E9PN63	330 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	MEIS2	O14770	477 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	CFB	P00751	764 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	FAM86B2	P0C5J1	330 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	MSL3P1	P0C860	447 aa		12.51	□□□□□ -0.41
CDK5RAP3-231	ENST00000584063	PYGB	P11216	843 aa		12.51	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 28 ms