RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CASP10Q92851 521 aa22.81■■□□□ 1.24
SHMT1-209ENST00000582653 LLPHQ9BRT6 129 aaKnown RBP22.81■■□□□ 1.24
SHMT1-209ENST00000582653 KCNH6Q9H252 994 aa22.81■■□□□ 1.24
SHMT1-209ENST00000582653 IRAK3Q9Y616 596 aa22.81■■□□□ 1.24
SHMT1-209ENST00000582653 POTEMA6NI47 508 aa22.8■■□□□ 1.24
SHMT1-209ENST00000582653 CLASP2O75122 1294 aaKnown RBP22.8■■□□□ 1.24
SHMT1-209ENST00000582653 ZC3H11AO75152 810 aaKnown RBP eCLIP22.8■■□□□ 1.24
SHMT1-209ENST00000582653 LYPLA2O95372 231 aa22.8■■□□□ 1.24
SHMT1-209ENST00000582653 GIT2Q14161 759 aa22.8■■□□□ 1.24
SHMT1-209ENST00000582653 BMP8AQ7Z5Y6 402 aa22.8■■□□□ 1.24
SHMT1-209ENST00000582653 DDX53Q86TM3 631 aaKnown RBP22.8■■□□□ 1.24
SHMT1-209ENST00000582653 VPS52Q8N1B4 723 aa22.8■■□□□ 1.24
SHMT1-209ENST00000582653 PIGOQ8TEQ8 1089 aa22.8■■□□□ 1.24
SHMT1-209ENST00000582653 IGSF21Q96ID5 467 aa22.8■■□□□ 1.24
SHMT1-209ENST00000582653 MFSD14AQ96MC6 490 aa22.8■■□□□ 1.24
SHMT1-209ENST00000582653 INPP5FQ9Y2H2 1132 aa22.8■■□□□ 1.24
SHMT1-209ENST00000582653 HCFC2Q9Y5Z7 792 aa22.8■■□□□ 1.24
SHMT1-209ENST00000582653 ZXDAP98168 799 aa22.79■■□□□ 1.24
SHMT1-209ENST00000582653 RNASELQ05823 741 aaKnown RBP22.79■■□□□ 1.24
SHMT1-209ENST00000582653 POU5F1BQ06416 359 aa22.79■■□□□ 1.24
SHMT1-209ENST00000582653 PCBP1Q15365 356 aaKnown RBP eCLIP22.79■■□□□ 1.24
SHMT1-209ENST00000582653 ZNF174Q15697 407 aa22.79■■□□□ 1.24
SHMT1-209ENST00000582653 AGMOQ6ZNB7 445 aa22.79■■□□□ 1.24
SHMT1-209ENST00000582653 TMEM173Q86WV6 379 aaPredicted RBP22.79■■□□□ 1.24
SHMT1-209ENST00000582653 ZSCAN31Q96LW9 406 aaPredicted RBP22.79■■□□□ 1.24
SHMT1-209ENST00000582653 ANKEF1Q9NU02 776 aa22.79■■□□□ 1.24
SHMT1-209ENST00000582653 KANSL3Q9P2N6 904 aa22.79■■□□□ 1.24
SHMT1-209ENST00000582653 TRIOO75962 3097 aa22.78■■□□□ 1.24
SHMT1-209ENST00000582653 ARID2Q68CP9 1835 aa22.78■■□□□ 1.24
SHMT1-209ENST00000582653 ALDH2P05091 517 aa22.78■■□□□ 1.24
SHMT1-209ENST00000582653 CTSAP10619 480 aa22.78■■□□□ 1.24
SHMT1-209ENST00000582653 RARRES1P49788 294 aa22.78■■□□□ 1.24
SHMT1-209ENST00000582653 MXD4Q14582 209 aaPredicted RBP22.78■■□□□ 1.24
SHMT1-209ENST00000582653 TPRNQ4KMQ1 711 aa22.78■■□□□ 1.24
SHMT1-209ENST00000582653 UBXN11Q5T124 520 aa22.78■■□□□ 1.24
SHMT1-209ENST00000582653 TRIM67Q6ZTA4 783 aa22.78■■□□□ 1.24
SHMT1-209ENST00000582653 ZNF280BQ86YH2 543 aa22.78■■□□□ 1.24
SHMT1-209ENST00000582653 ZBP1Q9H171 429 aa22.78■■□□□ 1.24
SHMT1-209ENST00000582653 ADAM7Q9H2U9 754 aa22.78■■□□□ 1.24
SHMT1-209ENST00000582653 SPATA31C1P0DKV0 1188 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 AFF1P51825 1210 aaKnown RBP22.77■■□□□ 1.24
SHMT1-209ENST00000582653 PTENP60484 403 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 ITIH3Q06033 890 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 CNNM3Q8NE01 707 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 FBXO18Q8NFZ0 1043 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 URGCPQ8TCY9 931 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 ASAP3Q8TDY4 903 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 APOL5Q9BWW9 433 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 GBP3Q9H0R5 595 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 FOXP1Q9H334 677 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-209ENST00000582653 RSAD1Q9HA92 442 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 UBN1Q9NPG3 1134 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 DNAJB4Q9UDY4 337 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 CNTNAP2Q9UHC6 1331 aa22.77■■□□□ 1.24
SHMT1-209ENST00000582653 DGAT1O75907 488 aa22.76■■□□□ 1.23
SHMT1-209ENST00000582653 DDHD2O94830 711 aa22.76■■□□□ 1.23
SHMT1-209ENST00000582653 XRCC6P12956 609 aaKnown RBP eCLIP22.76■■□□□ 1.23
SHMT1-209ENST00000582653 NCLP19338 710 aaKnown RBP22.76■■□□□ 1.23
SHMT1-209ENST00000582653 AXLP30530 894 aa22.76■■□□□ 1.23
SHMT1-209ENST00000582653 ARL2P36404 184 aa22.76■■□□□ 1.23
SHMT1-209ENST00000582653 SLC11A1P49279 550 aa22.76■■□□□ 1.23
SHMT1-209ENST00000582653 CES5AQ6NT32 575 aa22.76■■□□□ 1.23
SHMT1-209ENST00000582653 CATSPER3Q86XQ3 398 aa22.76■■□□□ 1.23
SHMT1-209ENST00000582653 FAM184AQ8NB25 1140 aa22.76■■□□□ 1.23
SHMT1-209ENST00000582653 TMEM87AQ8NBN3 555 aa22.76■■□□□ 1.23
SHMT1-209ENST00000582653 CCDC43Q96MW1 224 aaKnown RBP22.76■■□□□ 1.23
SHMT1-209ENST00000582653 SH2B1Q9NRF2 756 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-209ENST00000582653 STK39Q9UEW8 545 aa22.76■■□□□ 1.23
SHMT1-209ENST00000582653 B4GALT3O60512 393 aa22.75■■□□□ 1.23
SHMT1-209ENST00000582653 TSPAN1O60635 241 aa22.75■■□□□ 1.23
SHMT1-209ENST00000582653 MED24O75448 989 aa22.75■■□□□ 1.23
SHMT1-209ENST00000582653 CA8P35219 290 aa22.75■■□□□ 1.23
SHMT1-209ENST00000582653 HMGN5P82970 282 aaKnown RBP22.75■■□□□ 1.23
SHMT1-209ENST00000582653 NCBP1Q09161 790 aaKnown RBP22.75■■□□□ 1.23
SHMT1-209ENST00000582653 CAPSQ13938 189 aa22.75■■□□□ 1.23
SHMT1-209ENST00000582653 MAEAQ7L5Y9 396 aa22.75■■□□□ 1.23
SHMT1-209ENST00000582653 IFNLR1Q8IU57 520 aaPredicted RBP22.75■■□□□ 1.23
SHMT1-209ENST00000582653 BCL7CQ8WUZ0 217 aaPredicted RBP22.75■■□□□ 1.23
SHMT1-209ENST00000582653 CPB2Q96IY4 423 aa22.75■■□□□ 1.23
SHMT1-209ENST00000582653 NECTIN4Q96NY8 510 aa22.75■■□□□ 1.23
SHMT1-209ENST00000582653 TMEM175Q9BSA9 504 aa22.75■■□□□ 1.23
SHMT1-209ENST00000582653 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.74■■□□□ 1.23
SHMT1-209ENST00000582653 TMEM221A6NGB7 291 aa22.74■■□□□ 1.23
SHMT1-209ENST00000582653 INO80B-WBP1J3KQ70 363 aa22.74■■□□□ 1.23
SHMT1-209ENST00000582653 M0R296 226 aa22.74■■□□□ 1.23
SHMT1-209ENST00000582653 USO1O60763 962 aaKnown RBP22.74■■□□□ 1.23
SHMT1-209ENST00000582653 ERLIN2O94905 339 aa22.74■■□□□ 1.23
SHMT1-209ENST00000582653 OR52Z1P0C646 297 aa22.74■■□□□ 1.23
SHMT1-209ENST00000582653 GLRA2P23416 452 aa22.74■■□□□ 1.23
SHMT1-209ENST00000582653 RBM25P49756 843 aaKnown RBP22.74■■□□□ 1.23
SHMT1-209ENST00000582653 GNL2Q13823 731 aaKnown RBP22.74■■□□□ 1.23
SHMT1-209ENST00000582653 TFDP1Q14186 410 aa22.74■■□□□ 1.23
SHMT1-209ENST00000582653 NBR1Q14596 966 aa22.74■■□□□ 1.23
SHMT1-209ENST00000582653 TTC38Q5R3I4 469 aa22.74■■□□□ 1.23
SHMT1-209ENST00000582653 SMG8Q8ND04 991 aaKnown RBP22.74■■□□□ 1.23
SHMT1-209ENST00000582653 AUTS2Q8WXX7 1259 aa22.74■■□□□ 1.23
SHMT1-209ENST00000582653 PBXIP1Q96AQ6 731 aa22.74■■□□□ 1.23
SHMT1-209ENST00000582653 FAM193BQ96PV7 902 aaPredicted RBP22.74■■□□□ 1.23
SHMT1-209ENST00000582653 EIF2AQ9BY44 585 aaKnown RBP22.74■■□□□ 1.23
SHMT1-209ENST00000582653 GPRC5CQ9NQ84 441 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms