RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 BHMG1C9JSJ3 638 aaPredicted RBP10.92□□□□□ -0.66
VPS53-220ENST00000576149 SLC16A4O15374 487 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 ABCB4P21439 1286 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 ARHGEF16Q5VV41 709 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 XRRA1Q6P2D8 792 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 POTEAQ6S8J7 498 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 NSMFQ6X4W1 530 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 PALB2Q86YC2 1186 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 ARHGEF19Q8IW93 802 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 IQCKQ8N0W5 287 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 WHAMMQ8TF30 809 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 AP1M1Q9BXS5 423 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 ISCUQ9H1K1 167 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 TAF1DQ9H5J8 278 aaPredicted RBP10.92□□□□□ -0.66
VPS53-220ENST00000576149 TAS2R14Q9NYV8 317 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 TTC7AQ9ULT0 858 aaPredicted RBP10.92□□□□□ -0.66
VPS53-220ENST00000576149 TESPA1A2RU30 521 aaPredicted RBP10.91□□□□□ -0.66
VPS53-220ENST00000576149 KRIT1O00522 736 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 SART1O43290 800 aaKnown RBP10.91□□□□□ -0.66
VPS53-220ENST00000576149 ERVK-9P63128 1117 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 PPFIA1Q13136 1202 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 DALRD3Q5D0E6 543 aaKnown RBP10.91□□□□□ -0.66
VPS53-220ENST00000576149 XKR9Q5GH70 373 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 FAM102BQ5T8I3 360 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 PLA2G4FQ68DD2 849 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 RDM1Q8NG50 284 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 ARHGEF26Q96DR7 871 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 ATG4CQ96DT6 458 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 ZIM3Q96PE6 472 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 RUFY1Q96T51 708 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 THAP2Q9H0W7 228 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 CWC15Q9P013 229 aaKnown RBP10.91□□□□□ -0.66
VPS53-220ENST00000576149 TCEAL9Q9UHQ7 104 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 RIPK3Q9Y572 518 aa10.91□□□□□ -0.66
VPS53-220ENST00000576149 DDX3YO15523 660 aaKnown RBP10.9□□□□□ -0.66
VPS53-220ENST00000576149 IVLP07476 585 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 HADHBP55084 474 aaKnown RBP10.9□□□□□ -0.66
VPS53-220ENST00000576149 CUL1Q13616 776 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 BAATQ14032 418 aaPredicted RBP10.9□□□□□ -0.66
VPS53-220ENST00000576149 NBPF12Q5TAG4 269 aaPredicted RBP10.9□□□□□ -0.66
VPS53-220ENST00000576149 ZNF746Q6NUN9 644 aaPredicted RBP10.9□□□□□ -0.66
VPS53-220ENST00000576149 LRRC31Q6UY01 552 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 ANO5Q75V66 913 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 VSIG10LQ86VR7 867 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 TMEM161BQ8NDZ6 487 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 SLC20A1Q8WUM9 679 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 WNK4Q96J92 1243 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 SENP7Q9BQF6 1050 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 MOV10L1Q9BXT6 1211 aaKnown RBP10.9□□□□□ -0.66
VPS53-220ENST00000576149 TMEM117Q9H0C3 514 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 RNF146Q9NTX7 359 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 HACL1Q9UJ83 578 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 TBX20Q9UMR3 447 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 EXOC7Q9UPT5 735 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 BCS1LQ9Y276 419 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 DIS3Q9Y2L1 958 aaKnown RBP10.9□□□□□ -0.66
VPS53-220ENST00000576149 NFKBIEO00221 500 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 SHOX2O60902 331 aaPredicted RBP10.9□□□□□ -0.66
VPS53-220ENST00000576149 ADRB2P07550 413 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 ECHS1P30084 290 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 CCND2P30279 289 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 ADSSP30520 456 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 NPTX2P47972 431 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 MXI1P50539 228 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 GUCY2FP51841 1108 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 SMTNP53814 917 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 BACE1P56817 501 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 TCEAL1Q15170 157 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 CFAP58Q5T655 872 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 TRMT1LQ7Z2T5 733 aaKnown RBP10.9□□□□□ -0.66
VPS53-220ENST00000576149 SAMD7Q7Z3H4 446 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 DEFB132Q7Z7B7 95 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 MAP4K3Q8IVH8 894 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 RHOT2Q8IXI1 618 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 PIK3R5Q8WYR1 880 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 GPRASP2Q96D09 838 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 HVCN1Q96D96 273 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 DDX47Q9H0S4 455 aaKnown RBP10.9□□□□□ -0.66
VPS53-220ENST00000576149 SEPT11Q9NVA2 429 aaKnown RBP10.9□□□□□ -0.66
VPS53-220ENST00000576149 COG5Q9UP83 839 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 PCDHA10Q9Y5I2 948 aa10.9□□□□□ -0.66
VPS53-220ENST00000576149 ANKRD63C9JTQ0 380 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 NR3C2P08235 984 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 ITGA4P13612 1032 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 BAG6P46379 1132 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 SNRNP35Q16560 246 aaKnown RBP10.89□□□□□ -0.67
VPS53-220ENST00000576149 TTMPQ5BVD1 217 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 NLRX1Q86UT6 975 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 CBWD2Q8IUF1 395 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 MICALL2Q8IY33 904 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 SCYL3Q8IZE3 742 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 REPS2Q8NFH8 660 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 ARL8AQ96BM9 186 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 NTPCRQ9BSD7 190 aaKnown RBP10.89□□□□□ -0.67
VPS53-220ENST00000576149 SLITRK6Q9H5Y7 841 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 GOLGA8IPA6NC78 632 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 GOLGA8JA6NMD2 632 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 CCDC169A6NNP5 214 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 FTLP02792 175 aaPredicted RBP10.89□□□□□ -0.67
VPS53-220ENST00000576149 CNGA1P29973 690 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms