RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 ZNF143P52747 638 aaPredicted RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 COPAP53621 1224 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 CENPCQ03188 943 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 KCNC4Q03721 635 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 SREBF2Q12772 1141 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 CLN3Q13286 438 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 NECTIN1Q15223 517 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 LLGL1Q15334 1064 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 ATAT1Q5SQI0 421 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 ITPRIPL1Q6GPH6 555 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 NAA16Q6N069 864 aaPredicted RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 ZSCAN25Q6NSZ9 544 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 PTRH1Q86Y79 214 aaKnown RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 APOBEC3FQ8IUX4 373 aaKnown RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 ARL10Q8N8L6 244 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 ZSCAN18Q8TBC5 510 aaPredicted RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 CNTNAP3BQ96NU0 1288 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 CNTNAP3Q9BZ76 1288 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 VPS11Q9H270 941 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 ELAC1Q9H777 363 aaKnown RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 EPB41L4AQ9HCS5 686 aaPredicted RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 EMC7Q9NPA0 242 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 AATFQ9NY61 560 aaKnown RBP eCLIP7.7□□□□□ -1.18
VPS53-217ENST00000575100 CDC23Q9UJX2 597 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 CYP8B1Q9UNU6 501 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 RBM8AQ9Y5S9 174 aaKnown RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 MRFAP1Q9Y605 127 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 MAST2Q6P0Q8 1798 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 PRODHO43272 600 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 OFD1O75665 1012 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 TBC1D8O95759 1140 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 HSPA4P34932 840 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 NF2P35240 595 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 IL2P60568 153 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 MTA1Q13330 715 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 PIK3R6Q5UE93 754 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 CCDC149Q6ZUS6 474 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 OVCH2Q7RTZ1 564 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 DZIP1Q86YF9 867 aaKnown RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 COLGALT2Q8IYK4 626 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 SDR42E1Q8WUS8 393 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 ZFPM2Q8WW38 1151 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 CENPIQ92674 756 aaPredicted RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 WNK4Q96J92 1243 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 HSH2DQ96JZ2 352 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 MRPL9Q9BYD2 267 aaKnown RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 UPF2Q9HAU5 1272 aaKnown RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 MKS1Q9NXB0 559 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 RTEL1Q9NZ71 1219 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 MARK1Q9P0L2 795 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 ZNF214Q9UL59 606 aaPredicted RBP7.7□□□□□ -1.18
VPS53-217ENST00000575100 A0A087WV62 115 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 H3BRJ5 948 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 FRS3O43559 492 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 FKTNO75072 461 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 FSHRP23945 695 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 ADCK5Q3MIX3 580 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 RILPL1Q5EBL4 403 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 C6orf118Q5T5N4 469 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 KIAA1211Q6ZU35 1233 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 NEK10Q6ZWH5 1172 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 ARMC9Q7Z3E5 817 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 BTLAQ7Z6A9 289 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 TTC30AQ86WT1 665 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 NXPE1Q8N323 547 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 TEX9Q8N6V9 391 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 SNX21Q969T3 373 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 C14orf119Q9NWQ9 140 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 IFT80Q9P2H3 777 aaPredicted RBP7.69□□□□□ -1.18
VPS53-217ENST00000575100 NFKBIL1Q9UBC1 381 aaPredicted RBP7.69□□□□□ -1.18
VPS53-217ENST00000575100 VPS9D1Q9Y2B5 631 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 SSC5DA1L4H1 1573 aa7.69□□□□□ -1.18
VPS53-217ENST00000575100 BHMG1C9JSJ3 638 aaPredicted RBP7.68□□□□□ -1.18
VPS53-217ENST00000575100 SLC27A2O14975 620 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 CD2BP2O95400 341 aaKnown RBP7.68□□□□□ -1.18
VPS53-217ENST00000575100 ALDH1A1P00352 501 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 CYP21A2P08686 494 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 FOSL1P15407 271 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 NME1P15531 152 aaKnown RBP7.68□□□□□ -1.18
VPS53-217ENST00000575100 ABCB4P21439 1286 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 ELF1P32519 619 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 PLCB4Q15147 1175 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 CCDC38Q502W7 563 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 PRAMEF18Q5VWM3 479 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 SPRYD7Q5W111 196 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 CREB3L3Q68CJ9 461 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 RTL10Q7L3V2 364 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 MILR1Q7Z6M3 343 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 DPP9Q86TI2 863 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 KRT78Q8N1N4 520 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 ZGPATQ8N5A5 531 aaKnown RBP7.68□□□□□ -1.18
VPS53-217ENST00000575100 DIS3LQ8TF46 1054 aaKnown RBP7.68□□□□□ -1.18
VPS53-217ENST00000575100 TBC1D22AQ8WUA7 517 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 KIAA1191Q96A73 305 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 PPP1R16BQ96T49 567 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 SLC9A7Q96T83 725 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 ZKSCAN3Q9BRR0 538 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 ATP8A2Q9NTI2 1148 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 CCDC39Q9UFE4 941 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 SUSD2Q9UGT4 822 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms