RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ERVK-5Q9HDB9 667 aa24.62■■□□□ 1.53
VPS53-211ENST00000571805 COL4A5P29400 1685 aa24.62■■□□□ 1.53
VPS53-211ENST00000571805 ZNF211Q13398 564 aaPredicted RBP24.62■■□□□ 1.53
VPS53-211ENST00000571805 TNIP1Q15025 636 aa24.62■■□□□ 1.53
VPS53-211ENST00000571805 PTGISQ16647 500 aa24.62■■□□□ 1.53
VPS53-211ENST00000571805 NAP1L3Q99457 506 aaPredicted RBP24.62■■□□□ 1.53
VPS53-211ENST00000571805 ST6GALNAC4Q9H4F1 302 aa24.62■■□□□ 1.53
VPS53-211ENST00000571805 VCAM1P19320 739 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 MAP3K10Q02779 954 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 PCNX4Q63HM2 1172 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 HAUS6Q7Z4H7 955 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 FAM83AQ86UY5 434 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 UBLCP1Q8WVY7 318 aaPredicted RBP24.61■■□□□ 1.53
VPS53-211ENST00000571805 PPM1EQ8WY54 764 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 USP20Q9Y2K6 914 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 A0A087WUV0 522 aaPredicted RBP24.61■■□□□ 1.53
VPS53-211ENST00000571805 MAPK13O15264 365 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 COPB2P35606 906 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 MCCD1P59942 119 aaPredicted RBP24.61■■□□□ 1.53
VPS53-211ENST00000571805 PPP2R5EQ16537 467 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 DUPD1Q68J44 220 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 C11orf63Q6NUN7 778 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 RPUSD2Q8IZ73 545 aaKnown RBP24.61■■□□□ 1.53
VPS53-211ENST00000571805 TXLNGYQ9BZA5 131 aa24.61■■□□□ 1.53
VPS53-211ENST00000571805 ASNSP08243 561 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 ADAT2Q7Z6V5 191 aaKnown RBP24.6■■□□□ 1.53
VPS53-211ENST00000571805 KAT5Q92993 513 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 SH2D3AQ9BRG2 576 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 CENPHQ9H3R5 247 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 TMOD4Q9NZQ9 345 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 PMM2O15305 246 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 DR1Q01658 176 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 DHX9Q08211 1270 aaKnown RBP24.6■■□□□ 1.53
VPS53-211ENST00000571805 BIRC3Q13489 604 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 RUFY4Q6ZNE9 571 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 PRPF38AQ8NAV1 312 aaKnown RBP24.6■■□□□ 1.53
VPS53-211ENST00000571805 PCDHB18PQ96TA0 734 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 TMEM117Q9H0C3 514 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 RAB17Q9H0T7 212 aa24.6■■□□□ 1.53
VPS53-211ENST00000571805 PFASO15067 1338 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 TMEM150BA6NC51 233 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 CHRNB2P17787 502 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 YWHABP31946 246 aaKnown RBP24.59■■□□□ 1.53
VPS53-211ENST00000571805 GPC5P78333 572 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 UGCGQ16739 394 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 MCF2L2Q86YR7 1114 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 MTMR14Q8NCE2 650 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 ERP44Q9BS26 406 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 ZNF341Q9BYN7 854 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 CTTNBP2NLQ9P2B4 639 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 ASTN2O75129 1339 aaPredicted RBP24.59■■□□□ 1.53
VPS53-211ENST00000571805 SRRM3A6NNA2 597 aaPredicted RBP24.59■■□□□ 1.53
VPS53-211ENST00000571805 RTN2O75298 545 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 PPFIA2O75334 1257 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 SGPL1O95470 568 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 HPDP32754 393 aaPredicted RBP24.59■■□□□ 1.53
VPS53-211ENST00000571805 SNRPFP62306 86 aaKnown RBP24.59■■□□□ 1.53
VPS53-211ENST00000571805 MTMR1Q13613 665 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 CLUL1Q15846 466 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 AADACL2Q6P093 401 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 SYTL5Q8TDW5 730 aaPredicted RBP24.59■■□□□ 1.53
VPS53-211ENST00000571805 TRIM31Q9BZY9 425 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 ZDHHC18Q9NUE0 388 aa24.59■■□□□ 1.53
VPS53-211ENST00000571805 NOCTQ9UK39 431 aaKnown RBP24.59■■□□□ 1.53
VPS53-211ENST00000571805 GOLGA6L10A0A0M3HER8 536 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 MIF4GDA9UHW6 222 aaKnown RBP24.58■■□□□ 1.53
VPS53-211ENST00000571805 SLC16A4O15374 487 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 NCKAP1LP55160 1127 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 AGBL2Q5U5Z8 902 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 B4GALNT4Q76KP1 1039 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 TADA2BQ86TJ2 420 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 FAM71AQ8IYT1 594 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 LARGE2Q8N3Y3 721 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 ARFGAP2Q8N6H7 521 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 KRT35Q92764 455 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 GPRC5CQ9NQ84 441 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 TBC1D22BQ9NU19 505 aa24.58■■□□□ 1.53
VPS53-211ENST00000571805 FAM187AA6NFU0 413 aa24.58■■□□□ 1.52
VPS53-211ENST00000571805 BACH1O14867 736 aa24.58■■□□□ 1.52
VPS53-211ENST00000571805 ADRB2P07550 413 aa24.58■■□□□ 1.52
VPS53-211ENST00000571805 ZNF746Q6NUN9 644 aaPredicted RBP24.58■■□□□ 1.52
VPS53-211ENST00000571805 GLG1Q92896 1179 aa24.58■■□□□ 1.52
VPS53-211ENST00000571805 KREMEN1Q96MU8 473 aa24.58■■□□□ 1.52
VPS53-211ENST00000571805 PSMD1Q99460 953 aa24.58■■□□□ 1.52
VPS53-211ENST00000571805 ZNF277Q9NRM2 450 aaPredicted RBP24.58■■□□□ 1.52
VPS53-211ENST00000571805 SLC12A6Q9UHW9 1150 aa24.58■■□□□ 1.52
VPS53-211ENST00000571805 CPP00450 1065 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 MXI1P50539 228 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 SEC24CP53992 1094 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 PEX3P56589 373 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 DHX34Q14147 1143 aaKnown RBP24.57■■□□□ 1.52
VPS53-211ENST00000571805 NOP9Q86U38 636 aaKnown RBP24.57■■□□□ 1.52
VPS53-211ENST00000571805 PACS2Q86VP3 889 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 C4orf19Q8IY42 314 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 CPXCR1Q8N123 301 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 EPS8L1Q8TE68 723 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 FMO2Q99518 471 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 PAGR1Q9BTK6 254 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 ALAS1P13196 640 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 MARCKSL1P49006 195 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms