RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 FLNBO75369 2602 aaKnown RBP20.46■□□□□ 0.87
CLK3-227ENST00000570296 SOBPA7XYQ1 873 aa20.46■□□□□ 0.87
CLK3-227ENST00000570296 ALDH2P05091 517 aa20.46■□□□□ 0.87
CLK3-227ENST00000570296 CD72P21854 359 aa20.46■□□□□ 0.87
CLK3-227ENST00000570296 FSHRP23945 695 aa20.46■□□□□ 0.87
CLK3-227ENST00000570296 TARSP26639 723 aaKnown RBP20.46■□□□□ 0.87
CLK3-227ENST00000570296 RAB27AP51159 221 aa20.46■□□□□ 0.87
CLK3-227ENST00000570296 TWF2Q6IBS0 349 aaKnown RBP20.46■□□□□ 0.87
CLK3-227ENST00000570296 LRRC71Q8N4P6 559 aa20.46■□□□□ 0.87
CLK3-227ENST00000570296 CTCFLQ8NI51 663 aaPredicted RBP20.46■□□□□ 0.87
CLK3-227ENST00000570296 URGCPQ8TCY9 931 aa20.46■□□□□ 0.87
CLK3-227ENST00000570296 DIAPH3Q9NSV4 1193 aa20.46■□□□□ 0.87
CLK3-227ENST00000570296 CDH7Q9ULB5 785 aa20.46■□□□□ 0.87
CLK3-227ENST00000570296 FAN1Q9Y2M0 1017 aa20.46■□□□□ 0.87
CLK3-227ENST00000570296 GDF9O60383 454 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 ZNF623O75123 536 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 MYBP10242 640 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 GLUD2P49448 558 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 MTAPQ13126 283 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 PPP2R5DQ14738 602 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 LONRF3Q496Y0 759 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 MAMSTRQ6ZN01 415 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 NLRP7Q8WX94 980 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 ZNF668Q96K58 619 aaPredicted RBP20.45■□□□□ 0.86
CLK3-227ENST00000570296 FAM167AQ96KS9 214 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 FAM217BQ9NTX9 383 aaPredicted RBP20.45■□□□□ 0.86
CLK3-227ENST00000570296 FAM105AQ9NUU6 356 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 ZMIZ1Q9ULJ6 1067 aa20.45■□□□□ 0.86
CLK3-227ENST00000570296 MRPS17Q9Y2R5 130 aaKnown RBP20.45■□□□□ 0.86
CLK3-227ENST00000570296 MEIS3P2A8K0S8 358 aa20.44■□□□□ 0.86
CLK3-227ENST00000570296 LIMK1P53667 647 aa20.44■□□□□ 0.86
CLK3-227ENST00000570296 NIPA1Q7RTP0 329 aa20.44■□□□□ 0.86
CLK3-227ENST00000570296 TEX2Q8IWB9 1127 aa20.44■□□□□ 0.86
CLK3-227ENST00000570296 IER2Q9BTL4 223 aa20.44■□□□□ 0.86
CLK3-227ENST00000570296 DSPP15924 2871 aaKnown RBP20.44■□□□□ 0.86
CLK3-227ENST00000570296 NRP1O14786 923 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 DHX15O43143 795 aaKnown RBP20.43■□□□□ 0.86
CLK3-227ENST00000570296 GAS2O43903 313 aaKnown RBP20.43■□□□□ 0.86
CLK3-227ENST00000570296 DDAH1O94760 285 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 DDHD2O94830 711 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 SPATA31D3P0C874 917 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 SFPQP23246 707 aaKnown RBP eCLIP20.43■□□□□ 0.86
CLK3-227ENST00000570296 GNAQP50148 359 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 ADCY1Q08828 1119 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 FZD5Q13467 585 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 ZNF852Q6ZMS4 543 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 PRR23BQ6ZRT6 265 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 SPATA31D4Q6ZUB0 917 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 TPRG1Q6ZUI0 275 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 RNF168Q8IYW5 571 aaPredicted RBP20.43■□□□□ 0.86
CLK3-227ENST00000570296 PGBD4Q96DM1 585 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 FAM193BQ96PV7 902 aaPredicted RBP20.43■□□□□ 0.86
CLK3-227ENST00000570296 GCOM2Q9BZD3 368 aaPredicted RBP20.43■□□□□ 0.86
CLK3-227ENST00000570296 KANSL3Q9P2N6 904 aa20.43■□□□□ 0.86
CLK3-227ENST00000570296 HIP1O00291 1037 aa20.42■□□□□ 0.86
CLK3-227ENST00000570296 CDC42EP1Q00587 391 aa20.42■□□□□ 0.86
CLK3-227ENST00000570296 DSG1Q02413 1049 aa20.42■□□□□ 0.86
CLK3-227ENST00000570296 TRMT1LQ7Z2T5 733 aaKnown RBP20.42■□□□□ 0.86
CLK3-227ENST00000570296 KDF1Q8NAX2 398 aaPredicted RBP20.42■□□□□ 0.86
CLK3-227ENST00000570296 GREB1Q4ZG55 1949 aa20.42■□□□□ 0.86
CLK3-227ENST00000570296 TGM5O43548 720 aa20.41■□□□□ 0.86
CLK3-227ENST00000570296 CSDE1O75534 798 aaKnown RBP20.41■□□□□ 0.86
CLK3-227ENST00000570296 ZMYND10O75800 440 aa20.41■□□□□ 0.86
CLK3-227ENST00000570296 EFEMP2O95967 443 aa20.41■□□□□ 0.86
CLK3-227ENST00000570296 FOSP01100 380 aaPredicted RBP20.41■□□□□ 0.86
CLK3-227ENST00000570296 PSAPP07602 524 aa20.41■□□□□ 0.86
CLK3-227ENST00000570296 ZNF746Q6NUN9 644 aaPredicted RBP20.41■□□□□ 0.86
CLK3-227ENST00000570296 UNQ6494/PRO21346Q6UXR6 183 aa20.41■□□□□ 0.86
CLK3-227ENST00000570296 TAS1R1Q7RTX1 841 aa20.41■□□□□ 0.86
CLK3-227ENST00000570296 PALB2Q86YC2 1186 aa20.41■□□□□ 0.86
CLK3-227ENST00000570296 SMAP1Q8IYB5 467 aaPredicted RBP20.41■□□□□ 0.86
CLK3-227ENST00000570296 SRBD1Q8N5C6 995 aaKnown RBP20.41■□□□□ 0.86
CLK3-227ENST00000570296 CHRDQ9H2X0 955 aa20.41■□□□□ 0.86
CLK3-227ENST00000570296 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.41■□□□□ 0.86
CLK3-227ENST00000570296 MARCH5Q9NX47 278 aa20.41■□□□□ 0.86
CLK3-227ENST00000570296 PIN4Q9Y237 131 aaKnown RBP20.41■□□□□ 0.86
CLK3-227ENST00000570296 TM4SF5O14894 197 aa20.4■□□□□ 0.86
CLK3-227ENST00000570296 PLEKHA8P1O95397 391 aa20.4■□□□□ 0.86
CLK3-227ENST00000570296 SIM2Q14190 667 aaPredicted RBP20.4■□□□□ 0.86
CLK3-227ENST00000570296 LILRA6Q6PI73 481 aa20.4■□□□□ 0.86
CLK3-227ENST00000570296 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.4■□□□□ 0.86
CLK3-227ENST00000570296 GPR65Q8IYL9 337 aa20.4■□□□□ 0.86
CLK3-227ENST00000570296 ZNF654Q8IZM8 581 aa20.4■□□□□ 0.86
CLK3-227ENST00000570296 FGF13Q92913 245 aa20.4■□□□□ 0.86
CLK3-227ENST00000570296 PHF20Q9BVI0 1012 aa20.4■□□□□ 0.86
CLK3-227ENST00000570296 CNTNAP2Q9UHC6 1331 aa20.4■□□□□ 0.86
CLK3-227ENST00000570296 IPO5O00410 1097 aaKnown RBP20.39■□□□□ 0.85
CLK3-227ENST00000570296 ZNF76P36508 570 aa20.39■□□□□ 0.85
CLK3-227ENST00000570296 SREBF1P36956 1147 aa20.39■□□□□ 0.85
CLK3-227ENST00000570296 AGMOQ6ZNB7 445 aa20.39■□□□□ 0.85
CLK3-227ENST00000570296 RALYLQ86SE5 291 aaKnown RBP20.39■□□□□ 0.85
CLK3-227ENST00000570296 IGDCC4Q8TDY8 1250 aa20.39■□□□□ 0.85
CLK3-227ENST00000570296 ANO3Q9BYT9 981 aa20.39■□□□□ 0.85
CLK3-227ENST00000570296 INO80BQ9C086 356 aaPredicted RBP20.39■□□□□ 0.85
CLK3-227ENST00000570296 TBC1D22BQ9NU19 505 aa20.39■□□□□ 0.85
CLK3-227ENST00000570296 FNIP2Q9P278 1114 aa20.39■□□□□ 0.85
CLK3-227ENST00000570296 GABBR1Q9UBS5 961 aa20.39■□□□□ 0.85
CLK3-227ENST00000570296 PCDHA10Q9Y5I2 948 aa20.39■□□□□ 0.85
CLK3-227ENST00000570296 NBEAQ8NFP9 2946 aa20.39■□□□□ 0.85
CLK3-227ENST00000570296 C1QTNF9BB2RNN3 333 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms