RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 GAP43P17677 238 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 NT5C2P49902 561 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 PLCB3Q01970 1234 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 SEPT7Q16181 437 aaKnown RBP15.57■□□□□ 0.08
VPS35-210ENST00000568784 ERMARDQ5T6L9 678 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 KAZNQ674X7 775 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 SAAL1Q96ER3 474 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 C9orf72Q96LT7 481 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 FAM167BQ9BTA0 163 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 AGPAT3Q9NRZ7 376 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 ITGB4P16144 1822 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 POC1B-GALNT4F8VUJ3 575 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 TOM1O60784 492 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 PHF2O75151 1096 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 BMP3P12645 472 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 MTM1Q13496 603 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 PPP2R5EQ16537 467 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 RNF207Q6ZRF8 634 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 ZNF365Q70YC5 407 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 ZNF564Q8TBZ8 553 aaPredicted RBP15.57■□□□□ 0.08
VPS35-210ENST00000568784 KCNQ5Q9NR82 932 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.57■□□□□ 0.08
VPS35-210ENST00000568784 PLCH1Q4KWH8 1693 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 SGPL1O95470 568 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 BRAFP15056 766 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 MARSP56192 900 aaKnown RBP15.57■□□□□ 0.08
VPS35-210ENST00000568784 PHLDB3Q6NSJ2 640 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 RHOT2Q8IXI1 618 aa15.57■□□□□ 0.08
VPS35-210ENST00000568784 FAM187AA6NFU0 413 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 KIAA0391O15091 583 aaKnown RBP15.56■□□□□ 0.08
VPS35-210ENST00000568784 CHRNA3P32297 505 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 MXI1P50539 228 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 KCNJ2P63252 427 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 AP3B2Q13367 1082 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 PPP2R5AQ15172 486 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 TMED2Q15363 201 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 C6orf89Q6UWU4 347 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 INTS8Q75QN2 995 aaKnown RBP15.56■□□□□ 0.08
VPS35-210ENST00000568784 NSMCE1Q8WV22 266 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 BICD1Q96G01 975 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 FAM20AQ96MK3 541 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 PARP2Q9UGN5 583 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 DDTLA6NHG4 134 aaPredicted RBP15.56■□□□□ 0.08
VPS35-210ENST00000568784 ANKRD63C9JTQ0 380 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 DIAPH2O60879 1101 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 HIP1RO75146 1068 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 PDE6CP51160 858 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 LACTBP83111 547 aaPredicted RBP15.56■□□□□ 0.08
VPS35-210ENST00000568784 BFSP1Q12934 665 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 DHX34Q14147 1143 aaKnown RBP15.56■□□□□ 0.08
VPS35-210ENST00000568784 DAB2IPQ5VWQ8 1189 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 RPAINQ86UA6 219 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 ARHGEF19Q8IW93 802 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 PRELID2Q8N945 189 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 P2RX7Q99572 595 aaKnown RBP15.56■□□□□ 0.08
VPS35-210ENST00000568784 TRPC6Q9Y210 931 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 IGF2BP3O00425 579 aaKnown RBP eCLIP15.56■□□□□ 0.08
VPS35-210ENST00000568784 FOSP01100 380 aaPredicted RBP15.56■□□□□ 0.08
VPS35-210ENST00000568784 ELF3P78545 371 aaPredicted RBP15.56■□□□□ 0.08
VPS35-210ENST00000568784 KRT17Q04695 432 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 RBM26Q5T8P6 1007 aaKnown RBP15.56■□□□□ 0.08
VPS35-210ENST00000568784 DUPD1Q68J44 220 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 CERS5Q8N5B7 392 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 CCDC17Q96LX7 622 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 CBWD1Q9BRT8 395 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 PLVAPQ9BX97 442 aa15.56■□□□□ 0.08
VPS35-210ENST00000568784 SLC16A3O15427 465 aaKnown RBP15.55■□□□□ 0.08
VPS35-210ENST00000568784 DDX3YO15523 660 aaKnown RBP15.55■□□□□ 0.08
VPS35-210ENST00000568784 PPFIA2O75334 1257 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 SPAG7O75391 227 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 ZNF449Q6P9G9 518 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 LXNQ9BS40 222 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 KLHL14Q9P2G3 628 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 ANAPC7Q9UJX3 599 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 TRIM33Q9UPN9 1127 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 TMEM150BA6NC51 233 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 PPEF1O14829 653 aaPredicted RBP15.55■□□□□ 0.08
VPS35-210ENST00000568784 ATP6V1G2O95670 118 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 KRT15P19012 456 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 CLK2P49760 499 aaKnown RBP15.55■□□□□ 0.08
VPS35-210ENST00000568784 PLCB4Q15147 1175 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 ATP8B4Q8TF62 1192 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 LARSQ9P2J5 1176 aaKnown RBP15.55■□□□□ 0.08
VPS35-210ENST00000568784 TTC7AQ9ULT0 858 aaPredicted RBP15.55■□□□□ 0.08
VPS35-210ENST00000568784 CTDP1Q9Y5B0 961 aaPredicted RBP15.55■□□□□ 0.08
VPS35-210ENST00000568784 H0Y3Z8 333 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 CRKP46108 304 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 SLMAPQ14BN4 828 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 MIER3Q7Z3K6 550 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 ETNPPLQ8TBG4 499 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 CCT6BQ92526 530 aa15.55■□□□□ 0.08
VPS35-210ENST00000568784 TDRD3Q9H7E2 651 aaKnown RBP15.55■□□□□ 0.08
VPS35-210ENST00000568784 PODXLO00592 558 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 CES2O00748 559 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 IFNB1P01574 187 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 MAPK4P31152 587 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 VAMP7P51809 220 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 PREPLQ4J6C6 727 aaPredicted RBP15.54■□□□□ 0.08
VPS35-210ENST00000568784 FAM102BQ5T8I3 360 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 TTC27Q6P3X3 843 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms