RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TMEM39AQ9NV64 488 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 RTEL1Q9NZ71 1219 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 GMIPQ9P107 970 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 ABCF2Q9UG63 623 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 TUBD1Q9UJT1 453 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 MAFFQ9ULX9 164 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 JAG2Q9Y219 1238 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 ZNF652Q9Y2D9 606 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 TRAF6Q9Y4K3 522 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 SNX5Q9Y5X3 404 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 SLC12A7Q9Y666 1083 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 SLIT3O75094 1523 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 ANKRD30BQ9BXX2 1392 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 ZNF644Q9H582 1327 aaPredicted RBP3.46□□□□□ -1.85
VPS35-209ENST00000568642 A0A1W2PNR3 127 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 CHURC1-FNTBB4DL54 471 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 H3BML4 177 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 RBAK-RBAKDNI3L0D1 243 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 SHOXO15266 292 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 EFSO43281 561 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 DOK2O60496 412 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 EFCAB14O75071 495 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 SIN3BO75182 1162 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 IL33O95760 270 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 ALDH2P05091 517 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 FAM157BP0CG42 384 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 AKR1B1P15121 316 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 DPEP1P16444 411 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 CTSSP25774 331 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 TARSP26639 723 aaKnown RBP3.46□□□□□ -1.86
VPS35-209ENST00000568642 GTF2E1P29083 439 aaPredicted RBP3.46□□□□□ -1.86
VPS35-209ENST00000568642 CD86P42081 329 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 ZNF132P52740 706 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 ZNF543Q08ER8 600 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 PPP2R5CQ13362 524 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 SNX17Q15036 470 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 PDCD2Q16342 344 aaPredicted RBP3.46□□□□□ -1.86
VPS35-209ENST00000568642 SV2CQ496J9 727 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 IZUMO3Q5VZ72 239 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 PGM2L1Q6PCE3 622 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 LMBR1LQ6UX01 489 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 HEATR4Q86WZ0 1026 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 MYLK4Q86YV6 388 aaPredicted RBP3.46□□□□□ -1.86
VPS35-209ENST00000568642 BRSK2Q8IWQ3 736 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 ZFPM1Q8IX07 1006 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 KREMEN2Q8NCW0 462 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 MAFAQ8NHW3 353 aaPredicted RBP3.46□□□□□ -1.86
VPS35-209ENST00000568642 CREB3L4Q8TEY5 395 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 NUP133Q8WUM0 1156 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 ATRIPQ8WXE1 791 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 HERVK_113Q902F9 699 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 DPF3Q92784 378 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 PTPRN2Q92932 1015 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 TNFRSF25Q93038 417 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 CENPTQ96BT3 561 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 WNK4Q96J92 1243 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 SEC62Q99442 399 aaKnown RBP3.46□□□□□ -1.86
VPS35-209ENST00000568642 TREX2Q9BQ50 279 aaPredicted RBP3.46□□□□□ -1.86
VPS35-209ENST00000568642 KATNAL1Q9BW62 490 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 BRIP1Q9BX63 1249 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 SLC26A6Q9BXS9 759 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 B3GNT5Q9BYG0 378 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 AGXT2Q9BYV1 514 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 VPS11Q9H270 941 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 TRIT1Q9H3H1 467 aaKnown RBP3.46□□□□□ -1.86
VPS35-209ENST00000568642 ZFYVE1Q9HBF4 777 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 WASH6PQ9NQA3 447 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 SAMD15Q9P1V8 674 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 B4GALT6Q9UBX8 382 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.46□□□□□ -1.86
VPS35-209ENST00000568642 GPR34Q9UPC5 381 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 PCDHA9Q9Y5H5 950 aa3.46□□□□□ -1.86
VPS35-209ENST00000568642 GPC6Q9Y625 555 aaPredicted RBP3.46□□□□□ -1.86
VPS35-209ENST00000568642 TEP1Q99973 2627 aaKnown RBP3.46□□□□□ -1.86
VPS35-209ENST00000568642 NAIPQ13075 1403 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 CASKIN1Q8WXD9 1431 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 ZNF292O60281 2723 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 TOGARAM1Q9Y4F4 1720 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 C17orf113A0A1B0GUU1 675 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 ANKRD34BA5PLL1 514 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 FAM86C2PA6NEL3 165 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 A6NLC8 198 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 F5H0A9 414 aaPredicted RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 PI4K2BG5E9Z4 385 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 CLGNO14967 610 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 P4HA2O15460 535 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 TMEM127O75204 238 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 TADA3O75528 432 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 SASH3O75995 380 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 FGF18O76093 207 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 UBXN7O94888 489 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 UBOX5O94941 541 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 PGM3O95394 542 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 B3GALT4O96024 378 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 CSTBP04080 98 aaKnown RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 HSP90AB1P08238 724 aaKnown RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 ZNF865P0CJ78 1059 aaPredicted RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 TSHRP16473 764 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 VCAM1P19320 739 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms