RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 SYPP08247 313 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 HSPD1P10809 573 aaKnown RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 SYT1P21579 422 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 IGHMBP2P38935 993 aaKnown RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 TEKQ02763 1124 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 PUM3Q15397 648 aaKnown RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 TCEA2Q15560 299 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 ME3Q16798 604 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 IMMTQ16891 758 aaKnown RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 SLC35F1Q5T1Q4 408 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 ACBD5Q5T8D3 534 aaPredicted RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 EEF1DP3Q658K8 133 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 NSMFQ6X4W1 530 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 CCDC129Q6ZRS4 1044 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 KIAA0907Q7Z7F0 614 aaPredicted RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 CREG2Q8IUH2 290 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 AGBL3Q8NEM8 1001 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 DIS3LQ8TF46 1054 aaKnown RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 BRI3BPQ8WY22 251 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 KCTD13Q8WZ19 329 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 EXOC2Q96KP1 924 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 FCRL3Q96P31 734 aaPredicted RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 SEC62Q99442 399 aaKnown RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 CDC6Q99741 560 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 GRPEL1Q9HAV7 217 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 FANCLQ9NW38 375 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 TPCN1Q9ULQ1 816 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 ZMYND8Q9ULU4 1186 aaPredicted RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 SLC5A6Q9Y289 635 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 GPR55Q9Y2T6 319 aaPredicted RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 PCDHA11Q9Y5I1 949 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 DDX60LQ5H9U9 1706 aaKnown RBP6.84□□□□□ -1.31
VPS39-209ENST00000568029 A0A1B0GUL6 1792 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 TRBV23OR9-2A0A075B6M9 112 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 SSU72P8A0A1W2PR75 194 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 WASH4PA8MWX3 477 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 MEIS1O00470 390 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 LETM1O95202 739 aaPredicted RBP6.83□□□□□ -1.32
VPS39-209ENST00000568029 CD3EP07766 207 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 ZBTB48P10074 688 aaPredicted RBP6.83□□□□□ -1.32
VPS39-209ENST00000568029 XRCC6P12956 609 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS39-209ENST00000568029 CCL5P13501 91 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 SYN1P17600 705 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 KLRK1P26718 216 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 GRIA2P42262 883 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 EGR3Q06889 387 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 RTP2Q5QGT7 225 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 DACT2Q5SW24 774 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 CAVIN1Q6NZI2 390 aaKnown RBP6.83□□□□□ -1.32
VPS39-209ENST00000568029 Q6ZUG5 572 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 ARMC9Q7Z3E5 817 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 FAM177A1Q8N128 213 aaPredicted RBP6.83□□□□□ -1.32
VPS39-209ENST00000568029 VGLL2Q8N8G2 317 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 NECAB1Q8N987 351 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 C1orf159Q96HA4 380 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 CDC5LQ99459 802 aaKnown RBP6.83□□□□□ -1.32
VPS39-209ENST00000568029 GDF15Q99988 308 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 LLPHQ9BRT6 129 aaKnown RBP6.83□□□□□ -1.32
VPS39-209ENST00000568029 MCMBPQ9BTE3 642 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 IER2Q9BTL4 223 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 LGR4Q9BXB1 951 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 MRPS23Q9Y3D9 190 aaKnown RBP6.83□□□□□ -1.32
VPS39-209ENST00000568029 ARAP2Q8WZ64 1704 aa6.83□□□□□ -1.32
VPS39-209ENST00000568029 MAST3O60307 1309 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 RPTORQ8N122 1335 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 AK9Q5TCS8 1911 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 MGAMO43451 1857 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 A0A1W2PPC1 479 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 TMEM82A0PJX8 343 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 VPS37CA5D8V6 355 aaPredicted RBP6.82□□□□□ -1.32
VPS39-209ENST00000568029 C2orf71A6NGG8 1288 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 E7EWF7 191 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 M0R2C6 588 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 PRODHO43272 600 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 DLX3O60479 287 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 PFKFB2O60825 505 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 RFPL3O75679 317 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 FARP2O94887 1054 aaPredicted RBP6.82□□□□□ -1.32
VPS39-209ENST00000568029 SNRPB2P08579 225 aaKnown RBP6.82□□□□□ -1.32
VPS39-209ENST00000568029 CYP21A2P08686 494 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 FGFR2P21802 821 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 NF2P35240 595 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 HMGN5P82970 282 aaKnown RBP6.82□□□□□ -1.32
VPS39-209ENST00000568029 EXOSC10Q01780 885 aaKnown RBP6.82□□□□□ -1.32
VPS39-209ENST00000568029 CYP4F3Q08477 520 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 MAP3K12Q12852 859 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 IKZF1Q13422 519 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 TOB2Q14106 344 aaPredicted RBP6.82□□□□□ -1.32
VPS39-209ENST00000568029 UBE3CQ15386 1083 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 ZSCAN23Q3MJ62 389 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 FOXB2Q5VYV0 432 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 E4F1Q66K89 784 aaPredicted RBP6.82□□□□□ -1.32
VPS39-209ENST00000568029 CYP2R1Q6VVX0 501 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 NBPF11Q86T75 865 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 WFDC3Q8IUB2 231 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 OPTNQ96CV9 577 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 ZBED3Q96IU2 234 aaPredicted RBP6.82□□□□□ -1.32
VPS39-209ENST00000568029 EYA3Q99504 573 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 FEZ1Q99689 392 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 MRPL4Q9BYD3 311 aaKnown RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms