RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 EFCAB12Q6NXP0 572 aa18.87■□□□□ 0.61
CLK3-217ENST00000566126 ZNF687Q8N1G0 1237 aa18.87■□□□□ 0.61
CLK3-217ENST00000566126 LRRC71Q8N4P6 559 aa18.87■□□□□ 0.61
CLK3-217ENST00000566126 MAP7D2Q96T17 732 aa18.87■□□□□ 0.61
CLK3-217ENST00000566126 PLEKHA4Q9H4M7 779 aa18.87■□□□□ 0.61
CLK3-217ENST00000566126 SPDYE3A6NKU9 549 aa18.86■□□□□ 0.61
CLK3-217ENST00000566126 FOXD2O60548 495 aaPredicted RBP18.86■□□□□ 0.61
CLK3-217ENST00000566126 AFF1P51825 1210 aaKnown RBP18.86■□□□□ 0.61
CLK3-217ENST00000566126 PDE1AP54750 535 aa18.86■□□□□ 0.61
CLK3-217ENST00000566126 ADCY1Q08828 1119 aa18.86■□□□□ 0.61
CLK3-217ENST00000566126 MAMSTRQ6ZN01 415 aa18.86■□□□□ 0.61
CLK3-217ENST00000566126 TRMT1LQ7Z2T5 733 aaKnown RBP18.86■□□□□ 0.61
CLK3-217ENST00000566126 PALB2Q86YC2 1186 aa18.86■□□□□ 0.61
CLK3-217ENST00000566126 RNF168Q8IYW5 571 aaPredicted RBP18.86■□□□□ 0.61
CLK3-217ENST00000566126 RRP36Q96EU6 259 aaKnown RBP18.86■□□□□ 0.61
CLK3-217ENST00000566126 SPZ1Q9BXG8 430 aa18.86■□□□□ 0.61
CLK3-217ENST00000566126 CHST12Q9NRB3 414 aa18.86■□□□□ 0.61
CLK3-217ENST00000566126 RXFP3Q9NSD7 469 aa18.86■□□□□ 0.61
CLK3-217ENST00000566126 MARCH5Q9NX47 278 aa18.86■□□□□ 0.61
CLK3-217ENST00000566126 LHX6Q9UPM6 363 aa18.86■□□□□ 0.61
CLK3-217ENST00000566126 F5P12259 2224 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 LOC400499M0QZD8 3231 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 NRP1O14786 923 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 TGM5O43548 720 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 HRO43593 1189 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 GAS2O43903 313 aaKnown RBP18.85■□□□□ 0.61
CLK3-217ENST00000566126 KCNK5O95279 499 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 EFEMP2O95967 443 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 NCLP19338 710 aaKnown RBP18.85■□□□□ 0.61
CLK3-217ENST00000566126 NTHL1P78549 312 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 ZNF852Q6ZMS4 543 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 MTSS1LQ765P7 747 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 TMEM175Q9BSA9 504 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 CHRDQ9H2X0 955 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 SSX2IPQ9Y2D8 614 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 FAN1Q9Y2M0 1017 aa18.85■□□□□ 0.61
CLK3-217ENST00000566126 MAFBQ9Y5Q3 323 aaPredicted RBP18.85■□□□□ 0.61
CLK3-217ENST00000566126 MAGEB2O15479 319 aa18.84■□□□□ 0.61
CLK3-217ENST00000566126 ALDH2P05091 517 aa18.84■□□□□ 0.61
CLK3-217ENST00000566126 GLUD2P49448 558 aa18.84■□□□□ 0.61
CLK3-217ENST00000566126 SRSF5Q13243 272 aaKnown RBP18.84■□□□□ 0.61
CLK3-217ENST00000566126 AASDHQ4L235 1098 aaPredicted RBP18.84■□□□□ 0.61
CLK3-217ENST00000566126 CEP55Q53EZ4 464 aa18.84■□□□□ 0.61
CLK3-217ENST00000566126 LILRA6Q6PI73 481 aa18.84■□□□□ 0.61
CLK3-217ENST00000566126 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.84■□□□□ 0.61
CLK3-217ENST00000566126 GRASPQ7Z6J2 395 aaPredicted RBP18.84■□□□□ 0.61
CLK3-217ENST00000566126 CKAP2LQ8IYA6 745 aa18.84■□□□□ 0.61
CLK3-217ENST00000566126 ZNF710Q8N1W2 664 aa18.84■□□□□ 0.61
CLK3-217ENST00000566126 FGF13Q92913 245 aa18.84■□□□□ 0.61
CLK3-217ENST00000566126 KXD1Q9BQD3 176 aa18.84■□□□□ 0.61
CLK3-217ENST00000566126 FAM105AQ9NUU6 356 aa18.84■□□□□ 0.61
CLK3-217ENST00000566126 SDK1Q7Z5N4 2213 aa18.84■□□□□ 0.61
CLK3-217ENST00000566126 NOTCH4Q99466 2003 aa18.83■□□□□ 0.61
CLK3-217ENST00000566126 LAMA5O15230 3695 aa18.83■□□□□ 0.61
CLK3-217ENST00000566126 ZNF623O75123 536 aa18.83■□□□□ 0.6
CLK3-217ENST00000566126 ZIC2O95409 532 aaPredicted RBP18.83■□□□□ 0.6
CLK3-217ENST00000566126 C1RP00736 705 aa18.83■□□□□ 0.6
CLK3-217ENST00000566126 SDSP20132 328 aa18.83■□□□□ 0.6
CLK3-217ENST00000566126 KIF5BP33176 963 aa18.83■□□□□ 0.6
CLK3-217ENST00000566126 HNRNPUQ00839 825 aaKnown RBP eCLIP18.83■□□□□ 0.6
CLK3-217ENST00000566126 SF3A2Q15428 464 aaKnown RBP18.83■□□□□ 0.6
CLK3-217ENST00000566126 TWF2Q6IBS0 349 aaKnown RBP18.83■□□□□ 0.6
CLK3-217ENST00000566126 DSCC1Q9BVC3 393 aa18.83■□□□□ 0.6
CLK3-217ENST00000566126 PHF20Q9BVI0 1012 aa18.83■□□□□ 0.6
CLK3-217ENST00000566126 LY9Q9HBG7 655 aa18.83■□□□□ 0.6
CLK3-217ENST00000566126 HEBP1Q9NRV9 189 aa18.83■□□□□ 0.6
CLK3-217ENST00000566126 SEC63Q9UGP8 760 aaKnown RBP18.83■□□□□ 0.6
CLK3-217ENST00000566126 WASF3Q9UPY6 502 aa18.83■□□□□ 0.6
CLK3-217ENST00000566126 TAF4O00268 1085 aa18.82■□□□□ 0.6
CLK3-217ENST00000566126 MEIS1O00470 390 aa18.82■□□□□ 0.6
CLK3-217ENST00000566126 IFIT3O14879 490 aaKnown RBP18.82■□□□□ 0.6
CLK3-217ENST00000566126 DHX15O43143 795 aaKnown RBP18.82■□□□□ 0.6
CLK3-217ENST00000566126 ZMYND10O75800 440 aa18.82■□□□□ 0.6
CLK3-217ENST00000566126 SKIP12755 728 aa18.82■□□□□ 0.6
CLK3-217ENST00000566126 TMOD1P28289 359 aa18.82■□□□□ 0.6
CLK3-217ENST00000566126 DSG1Q02413 1049 aa18.82■□□□□ 0.6
CLK3-217ENST00000566126 MIS18BP1Q6P0N0 1132 aa18.82■□□□□ 0.6
CLK3-217ENST00000566126 AGMOQ6ZNB7 445 aa18.82■□□□□ 0.6
CLK3-217ENST00000566126 NLRP7Q8WX94 980 aa18.82■□□□□ 0.6
CLK3-217ENST00000566126 SCLT1Q96NL6 688 aa18.82■□□□□ 0.6
CLK3-217ENST00000566126 LSM14BQ9BX40 385 aaKnown RBP18.82■□□□□ 0.6
CLK3-217ENST00000566126 CEP131Q9UPN4 1083 aa18.82■□□□□ 0.6
CLK3-217ENST00000566126 MRPS17Q9Y2R5 130 aaKnown RBP18.82■□□□□ 0.6
CLK3-217ENST00000566126 PPP2R5DQ14738 602 aa18.81■□□□□ 0.6
CLK3-217ENST00000566126 STPG1Q5TH74 334 aa18.81■□□□□ 0.6
CLK3-217ENST00000566126 ITFG1Q8TB96 612 aa18.81■□□□□ 0.6
CLK3-217ENST00000566126 URGCPQ8TCY9 931 aa18.81■□□□□ 0.6
CLK3-217ENST00000566126 PRG3Q9Y2Y8 225 aaPredicted RBP18.81■□□□□ 0.6
CLK3-217ENST00000566126 TMEM8BA6NDV4 472 aa18.8■□□□□ 0.6
CLK3-217ENST00000566126 CHURC1-FNTBB4DL54 471 aa18.8■□□□□ 0.6
CLK3-217ENST00000566126 SPINK2P20155 84 aa18.8■□□□□ 0.6
CLK3-217ENST00000566126 SMARCA1P28370 1054 aa18.8■□□□□ 0.6
CLK3-217ENST00000566126 FNTBP49356 437 aa18.8■□□□□ 0.6
CLK3-217ENST00000566126 CCR3P51677 355 aa18.8■□□□□ 0.6
CLK3-217ENST00000566126 CWC27Q6UX04 472 aaKnown RBP18.8■□□□□ 0.6
CLK3-217ENST00000566126 GLYCTKQ8IVS8 523 aa18.8■□□□□ 0.6
CLK3-217ENST00000566126 FAM160A2Q8N612 972 aaPredicted RBP18.8■□□□□ 0.6
CLK3-217ENST00000566126 RILPL2Q969X0 211 aa18.8■□□□□ 0.6
CLK3-217ENST00000566126 PGBD1Q96JS3 809 aa18.8■□□□□ 0.6
CLK3-217ENST00000566126 B3GALT6Q96L58 329 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms