RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 MYH11P35749 1972 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 NT5C1B-RDH14C9J2C7 533 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 B4GALT5O43286 388 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 ARF4P18085 180 aaPredicted RBP20.38■□□□□ 0.85
CLN3-221ENST00000566057 AFF1P51825 1210 aaKnown RBP20.38■□□□□ 0.85
CLN3-221ENST00000566057 BCAR1P56945 870 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 ATP2C1P98194 919 aaPredicted RBP20.38■□□□□ 0.85
CLN3-221ENST00000566057 ADAM15Q13444 863 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 SLC39A11Q8N1S5 342 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 MICAL1Q8TDZ2 1067 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 MRPS27Q92552 414 aaKnown RBP20.38■□□□□ 0.85
CLN3-221ENST00000566057 PGBD4Q96DM1 585 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 MMTAG2Q9BU76 263 aaKnown RBP20.38■□□□□ 0.85
CLN3-221ENST00000566057 MRPL9Q9BYD2 267 aaKnown RBP20.38■□□□□ 0.85
CLN3-221ENST00000566057 RAB34Q9BZG1 259 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 BHMT2Q9H2M3 363 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 TBC1D13Q9NVG8 400 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 SPG21Q9NZD8 308 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 LZTS1Q9Y250 596 aa20.38■□□□□ 0.85
CLN3-221ENST00000566057 LRRIQ4A6NIV6 560 aa20.37■□□□□ 0.85
CLN3-221ENST00000566057 FSCN2O14926 492 aa20.37■□□□□ 0.85
CLN3-221ENST00000566057 AXLP30530 894 aa20.37■□□□□ 0.85
CLN3-221ENST00000566057 NRIP1P48552 1158 aa20.37■□□□□ 0.85
CLN3-221ENST00000566057 PTCRAQ6ISU1 281 aaPredicted RBP20.37■□□□□ 0.85
CLN3-221ENST00000566057 NOTUMQ6P988 496 aa20.37■□□□□ 0.85
CLN3-221ENST00000566057 RNF39Q9H2S5 420 aa20.37■□□□□ 0.85
CLN3-221ENST00000566057 NRDE2Q9H7Z3 1164 aa20.37■□□□□ 0.85
CLN3-221ENST00000566057 IPPQ9Y573 584 aa20.37■□□□□ 0.85
CLN3-221ENST00000566057 GRXCR2A6NFK2 248 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 E9PMD0 336 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 PER2O15055 1255 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 B4GALT3O60512 393 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 ZC3H11AO75152 810 aaKnown RBP eCLIP20.36■□□□□ 0.85
CLN3-221ENST00000566057 TBX10O75333 385 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 IL9P15248 144 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 NCLP19338 710 aaKnown RBP20.36■□□□□ 0.85
CLN3-221ENST00000566057 PPM1AP35813 382 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 CDCA2Q69YH5 1023 aaPredicted RBP20.36■□□□□ 0.85
CLN3-221ENST00000566057 KCNK18Q7Z418 384 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 TMEM173Q86WV6 379 aaPredicted RBP20.36■□□□□ 0.85
CLN3-221ENST00000566057 CDR2LQ86X02 465 aaPredicted RBP20.36■□□□□ 0.85
CLN3-221ENST00000566057 ZNF280BQ86YH2 543 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 EFHBQ8N7U6 833 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 CSRNP2Q9H175 543 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 TLE6Q9H808 572 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 RSAD1Q9HA92 442 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 DNAJB4Q9UDY4 337 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 PUF60Q9UHX1 559 aaKnown RBP20.36■□□□□ 0.85
CLN3-221ENST00000566057 HES2Q9Y543 173 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 STK24Q9Y6E0 443 aa20.36■□□□□ 0.85
CLN3-221ENST00000566057 TTLL13PA6NNM8 815 aa20.35■□□□□ 0.85
CLN3-221ENST00000566057 ALDH7A1P49419 539 aaKnown RBP20.35■□□□□ 0.85
CLN3-221ENST00000566057 KRT17Q04695 432 aa20.35■□□□□ 0.85
CLN3-221ENST00000566057 RNASELQ05823 741 aaKnown RBP20.35■□□□□ 0.85
CLN3-221ENST00000566057 NCBP1Q09161 790 aaKnown RBP20.35■□□□□ 0.85
CLN3-221ENST00000566057 CLUL1Q15846 466 aa20.35■□□□□ 0.85
CLN3-221ENST00000566057 PLPP4Q5VZY2 271 aa20.35■□□□□ 0.85
CLN3-221ENST00000566057 KRT79Q5XKE5 535 aa20.35■□□□□ 0.85
CLN3-221ENST00000566057 RSPH1Q8WYR4 309 aa20.35■□□□□ 0.85
CLN3-221ENST00000566057 PPP2R3CQ969Q6 453 aa20.35■□□□□ 0.85
CLN3-221ENST00000566057 CCDC51Q96ER9 411 aa20.35■□□□□ 0.85
CLN3-221ENST00000566057 TCF25Q9BQ70 676 aa20.35■□□□□ 0.85
CLN3-221ENST00000566057 GBP3Q9H0R5 595 aa20.35■□□□□ 0.85
CLN3-221ENST00000566057 FZD8Q9H461 694 aa20.35■□□□□ 0.85
CLN3-221ENST00000566057 CNTNAP2Q9UHC6 1331 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 TRIP11Q15643 1979 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 A0A1B0GUA9 196 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 VWA3AA6NCI4 1184 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 HIDE1A8MVS5 230 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 DDHD2O94830 711 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 EYA4O95677 639 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 GLP2RO95838 553 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 GALTP07902 379 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 ITGA4P13612 1032 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 RBM10P98175 930 aaKnown RBP20.34■□□□□ 0.85
CLN3-221ENST00000566057 PDE12Q6L8Q7 609 aaKnown RBP20.34■□□□□ 0.85
CLN3-221ENST00000566057 CNNM3Q8NE01 707 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 BCL7CQ8WUZ0 217 aaPredicted RBP20.34■□□□□ 0.85
CLN3-221ENST00000566057 CD320Q9NPF0 282 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 ENTPD7Q9NQZ7 604 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 CLEC1BQ9P126 229 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 DNM3Q9UQ16 869 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 USP20Q9Y2K6 914 aa20.34■□□□□ 0.85
CLN3-221ENST00000566057 POMCP01189 267 aa20.33■□□□□ 0.85
CLN3-221ENST00000566057 NAMPTP43490 491 aa20.33■□□□□ 0.85
CLN3-221ENST00000566057 SLC11A1P49279 550 aa20.33■□□□□ 0.85
CLN3-221ENST00000566057 PUS10Q3MIT2 529 aaKnown RBP20.33■□□□□ 0.85
CLN3-221ENST00000566057 ARL6IP4Q66PJ3 421 aaKnown RBP20.33■□□□□ 0.85
CLN3-221ENST00000566057 PPP4R3CPQ6ZMV5 832 aa20.33■□□□□ 0.85
CLN3-221ENST00000566057 FAM178BQ8IXR5 827 aa20.33■□□□□ 0.85
CLN3-221ENST00000566057 VN1R2Q8NFZ6 395 aa20.33■□□□□ 0.85
CLN3-221ENST00000566057 URGCPQ8TCY9 931 aa20.33■□□□□ 0.85
CLN3-221ENST00000566057 PNMA5Q96PV4 448 aa20.33■□□□□ 0.85
CLN3-221ENST00000566057 NXF3Q9H4D5 531 aaKnown RBP20.33■□□□□ 0.85
CLN3-221ENST00000566057 MIOSQ9NXC5 875 aa20.33■□□□□ 0.85
CLN3-221ENST00000566057 GTF3C3Q9Y5Q9 886 aa20.33■□□□□ 0.85
CLN3-221ENST00000566057 VPS37CA5D8V6 355 aaPredicted RBP20.32■□□□□ 0.84
CLN3-221ENST00000566057 ARL5CA6NH57 179 aa20.32■□□□□ 0.84
CLN3-221ENST00000566057 NPTXRO95502 500 aa20.32■□□□□ 0.84
CLN3-221ENST00000566057 EDN1P05305 212 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms