RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 AXLP30530 894 aa24.98■■□□□ 1.59
CLN3-215ENST00000565236 RBM10P98175 930 aaKnown RBP24.98■■□□□ 1.59
CLN3-215ENST00000565236 SMC1AQ14683 1233 aaKnown RBP24.98■■□□□ 1.59
CLN3-215ENST00000565236 TTC38Q5R3I4 469 aa24.98■■□□□ 1.59
CLN3-215ENST00000565236 UBXN11Q5T124 520 aa24.98■■□□□ 1.59
CLN3-215ENST00000565236 AGMOQ6ZNB7 445 aa24.98■■□□□ 1.59
CLN3-215ENST00000565236 VN1R2Q8NFZ6 395 aa24.98■■□□□ 1.59
CLN3-215ENST00000565236 ERMNQ8TAM6 284 aa24.98■■□□□ 1.59
CLN3-215ENST00000565236 NACC1Q96RE7 527 aa24.98■■□□□ 1.59
CLN3-215ENST00000565236 LRFN3Q9BTN0 628 aa24.98■■□□□ 1.59
CLN3-215ENST00000565236 GBP3Q9H0R5 595 aa24.98■■□□□ 1.59
CLN3-215ENST00000565236 NRDE2Q9H7Z3 1164 aa24.98■■□□□ 1.59
CLN3-215ENST00000565236 NOL7Q9UMY1 257 aaKnown RBP24.98■■□□□ 1.59
CLN3-215ENST00000565236 CNTNAP2Q9UHC6 1331 aa24.97■■□□□ 1.59
CLN3-215ENST00000565236 GPR37L1O60883 481 aa24.97■■□□□ 1.59
CLN3-215ENST00000565236 IFNLR1Q8IU57 520 aaPredicted RBP24.97■■□□□ 1.59
CLN3-215ENST00000565236 MRPL43Q8N983 215 aaKnown RBP24.97■■□□□ 1.59
CLN3-215ENST00000565236 CNNM3Q8NE01 707 aa24.97■■□□□ 1.59
CLN3-215ENST00000565236 ASAP3Q8TDY4 903 aa24.97■■□□□ 1.59
CLN3-215ENST00000565236 POLR3CQ9BUI4 534 aaPredicted RBP24.97■■□□□ 1.59
CLN3-215ENST00000565236 RSAD1Q9HA92 442 aa24.97■■□□□ 1.59
CLN3-215ENST00000565236 KANSL3Q9P2N6 904 aa24.97■■□□□ 1.59
CLN3-215ENST00000565236 TSPAN1O60635 241 aa24.96■■□□□ 1.59
CLN3-215ENST00000565236 USO1O60763 962 aaKnown RBP24.96■■□□□ 1.59
CLN3-215ENST00000565236 MED24O75448 989 aa24.96■■□□□ 1.59
CLN3-215ENST00000565236 CXCL14O95715 111 aa24.96■■□□□ 1.59
CLN3-215ENST00000565236 GALTP07902 379 aa24.96■■□□□ 1.59
CLN3-215ENST00000565236 CA8P35219 290 aa24.96■■□□□ 1.59
CLN3-215ENST00000565236 TRAPPC10P48553 1259 aa24.96■■□□□ 1.59
CLN3-215ENST00000565236 CAPSQ13938 189 aa24.96■■□□□ 1.59
CLN3-215ENST00000565236 RABEP1Q15276 862 aa24.96■■□□□ 1.59
CLN3-215ENST00000565236 NOTUMQ6P988 496 aa24.96■■□□□ 1.59
CLN3-215ENST00000565236 TMEM184AQ6ZMB5 413 aa24.96■■□□□ 1.59
CLN3-215ENST00000565236 IGSF21Q96ID5 467 aa24.96■■□□□ 1.59
CLN3-215ENST00000565236 POLR3FQ9H1D9 316 aaPredicted RBP24.96■■□□□ 1.59
CLN3-215ENST00000565236 DBR1Q9UK59 544 aaKnown RBP24.96■■□□□ 1.59
CLN3-215ENST00000565236 USP15Q9Y4E8 981 aaPredicted RBP24.96■■□□□ 1.59
CLN3-215ENST00000565236 ST18O60284 1047 aa24.95■■□□□ 1.58
CLN3-215ENST00000565236 ITGA4P13612 1032 aa24.95■■□□□ 1.58
CLN3-215ENST00000565236 NCLP19338 710 aaKnown RBP24.95■■□□□ 1.58
CLN3-215ENST00000565236 GLRA2P23416 452 aa24.95■■□□□ 1.58
CLN3-215ENST00000565236 LLGL2Q6P1M3 1020 aa24.95■■□□□ 1.58
CLN3-215ENST00000565236 MAEAQ7L5Y9 396 aa24.95■■□□□ 1.58
CLN3-215ENST00000565236 ZNF280BQ86YH2 543 aa24.95■■□□□ 1.58
CLN3-215ENST00000565236 VPS52Q8N1B4 723 aa24.95■■□□□ 1.58
CLN3-215ENST00000565236 CCDC51Q96ER9 411 aa24.95■■□□□ 1.58
CLN3-215ENST00000565236 CPB2Q96IY4 423 aa24.95■■□□□ 1.58
CLN3-215ENST00000565236 FAM193BQ96PV7 902 aaPredicted RBP24.95■■□□□ 1.58
CLN3-215ENST00000565236 UBN1Q9NPG3 1134 aa24.95■■□□□ 1.58
CLN3-215ENST00000565236 DNAJB4Q9UDY4 337 aa24.95■■□□□ 1.58
CLN3-215ENST00000565236 FAM86C2PA6NEL3 165 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 C2orf71A6NGG8 1288 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 DCXO43602 365 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 RPA1P27694 616 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 MBTD1Q05BQ5 628 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 KCNC3Q14003 757 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 DDX53Q86TM3 631 aaKnown RBP24.94■■□□□ 1.58
CLN3-215ENST00000565236 TMEM87AQ8NBN3 555 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 SMG8Q8ND04 991 aaKnown RBP24.94■■□□□ 1.58
CLN3-215ENST00000565236 MCPH1Q8NEM0 835 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 NFKBIZQ9BYH8 718 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 CSRNP2Q9H175 543 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 C11orf16Q9NQ32 467 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 RAPGEFL1Q9UHV5 662 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 KIF3AQ9Y496 699 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 IPPQ9Y573 584 aa24.94■■□□□ 1.58
CLN3-215ENST00000565236 ALDH2P05091 517 aa24.93■■□□□ 1.58
CLN3-215ENST00000565236 U2AF2P26368 475 aaKnown RBP eCLIP24.93■■□□□ 1.58
CLN3-215ENST00000565236 SLC11A1P49279 550 aa24.93■■□□□ 1.58
CLN3-215ENST00000565236 ANKRD54Q6NXT1 300 aa24.93■■□□□ 1.58
CLN3-215ENST00000565236 POTEGQ6S5H5 508 aa24.93■■□□□ 1.58
CLN3-215ENST00000565236 TMEM173Q86WV6 379 aaPredicted RBP24.93■■□□□ 1.58
CLN3-215ENST00000565236 EIF2AQ9BY44 585 aaKnown RBP24.93■■□□□ 1.58
CLN3-215ENST00000565236 UPF2Q9HAU5 1272 aaKnown RBP24.93■■□□□ 1.58
CLN3-215ENST00000565236 GPRC5CQ9NQ84 441 aa24.93■■□□□ 1.58
CLN3-215ENST00000565236 LRRIQ4A6NIV6 560 aa24.92■■□□□ 1.58
CLN3-215ENST00000565236 DDHD2O94830 711 aa24.92■■□□□ 1.58
CLN3-215ENST00000565236 POMCP01189 267 aa24.92■■□□□ 1.58
CLN3-215ENST00000565236 AFF1P51825 1210 aaKnown RBP24.92■■□□□ 1.58
CLN3-215ENST00000565236 TRIM6Q9C030 488 aaPredicted RBP24.92■■□□□ 1.58
CLN3-215ENST00000565236 ZBP1Q9H171 429 aa24.92■■□□□ 1.58
CLN3-215ENST00000565236 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP24.91■■□□□ 1.58
CLN3-215ENST00000565236 ARHGEF35A5YM69 484 aa24.91■■□□□ 1.58
CLN3-215ENST00000565236 HOXB8P17481 243 aaPredicted RBP24.91■■□□□ 1.58
CLN3-215ENST00000565236 ARF4P18085 180 aaPredicted RBP24.91■■□□□ 1.58
CLN3-215ENST00000565236 NBR1Q14596 966 aa24.91■■□□□ 1.58
CLN3-215ENST00000565236 AMHR2Q16671 573 aa24.91■■□□□ 1.58
CLN3-215ENST00000565236 HAUS3Q68CZ6 603 aa24.91■■□□□ 1.58
CLN3-215ENST00000565236 HACE1Q8IYU2 909 aa24.91■■□□□ 1.58
CLN3-215ENST00000565236 C4orf32Q8N8J7 132 aa24.91■■□□□ 1.58
CLN3-215ENST00000565236 BCL7CQ8WUZ0 217 aaPredicted RBP24.91■■□□□ 1.58
CLN3-215ENST00000565236 CASP10Q92851 521 aa24.91■■□□□ 1.58
CLN3-215ENST00000565236 TMEM175Q9BSA9 504 aa24.91■■□□□ 1.58
CLN3-215ENST00000565236 PHF7Q9BWX1 381 aaPredicted RBP24.91■■□□□ 1.58
CLN3-215ENST00000565236 RNF39Q9H2S5 420 aa24.91■■□□□ 1.58
CLN3-215ENST00000565236 LRWD1Q9UFC0 647 aa24.91■■□□□ 1.58
CLN3-215ENST00000565236 FAN1Q9Y2M0 1017 aa24.91■■□□□ 1.58
CLN3-215ENST00000565236 B4GALT3O60512 393 aa24.9■■□□□ 1.58
CLN3-215ENST00000565236 CLASP2O75122 1294 aaKnown RBP24.9■■□□□ 1.58
CLN3-215ENST00000565236 CTSAP10619 480 aa24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms