RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 PRPF6O94906 941 aaKnown RBP22.66■■□□□ 1.22
CLN3-212ENST00000564574 TIMP1P01033 207 aa22.66■■□□□ 1.22
CLN3-212ENST00000564574 CCDC192P0DO97 292 aa22.66■■□□□ 1.22
CLN3-212ENST00000564574 AXLP30530 894 aa22.66■■□□□ 1.22
CLN3-212ENST00000564574 RFC2P35250 354 aa22.66■■□□□ 1.22
CLN3-212ENST00000564574 CT47A1Q5JQC4 288 aaPredicted RBP22.66■■□□□ 1.22
CLN3-212ENST00000564574 MRPL4Q9BYD3 311 aaKnown RBP22.66■■□□□ 1.22
CLN3-212ENST00000564574 NOC2LQ9Y3T9 749 aaKnown RBP22.66■■□□□ 1.22
CLN3-212ENST00000564574 SCN5AQ14524 2016 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 UMODL1Q5DID0 1318 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 TRIM43BA6NCK2 446 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 GPR182O15218 404 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 PIGRP01833 764 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 RAG1P15918 1043 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 PRCPP42785 496 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 TYRO3Q06418 890 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 NCBP1Q09161 790 aaKnown RBP22.65■■□□□ 1.22
CLN3-212ENST00000564574 LPIN1Q14693 890 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 AMHR2Q16671 573 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 CATSPER4Q7RTX7 472 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 FAM228AQ86W67 206 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 SMYD4Q8IYR2 804 aaPredicted RBP22.65■■□□□ 1.22
CLN3-212ENST00000564574 ADSSL1Q8N142 457 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 TRIM43Q96BQ3 446 aaPredicted RBP22.65■■□□□ 1.22
CLN3-212ENST00000564574 ANP32EQ9BTT0 268 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 WNT8AQ9H1J5 351 aa22.65■■□□□ 1.22
CLN3-212ENST00000564574 CNTNAP2Q9UHC6 1331 aa22.64■■□□□ 1.22
CLN3-212ENST00000564574 PSMA7O14818 248 aa22.64■■□□□ 1.21
CLN3-212ENST00000564574 EVI5O60447 810 aa22.64■■□□□ 1.21
CLN3-212ENST00000564574 GHRP10912 638 aa22.64■■□□□ 1.21
CLN3-212ENST00000564574 CYP2C18P33260 490 aa22.64■■□□□ 1.21
CLN3-212ENST00000564574 SNRPFP62306 86 aaKnown RBP22.64■■□□□ 1.21
CLN3-212ENST00000564574 PAK2Q13177 524 aa22.64■■□□□ 1.21
CLN3-212ENST00000564574 PRPF4BQ13523 1007 aaKnown RBP22.64■■□□□ 1.21
CLN3-212ENST00000564574 KNOP1Q1ED39 458 aaKnown RBP22.64■■□□□ 1.21
CLN3-212ENST00000564574 ZPBP2Q6X784 338 aa22.64■■□□□ 1.21
CLN3-212ENST00000564574 C7orf61Q8IZ16 206 aa22.64■■□□□ 1.21
CLN3-212ENST00000564574 SYCP3Q8IZU3 236 aa22.64■■□□□ 1.21
CLN3-212ENST00000564574 DHTKD1Q96HY7 919 aaPredicted RBP22.64■■□□□ 1.21
CLN3-212ENST00000564574 FUCA2Q9BTY2 467 aa22.64■■□□□ 1.21
CLN3-212ENST00000564574 CGNQ9P2M7 1197 aaKnown RBP22.64■■□□□ 1.21
CLN3-212ENST00000564574 PPP1R3GB7ZBB8 358 aa22.63■■□□□ 1.21
CLN3-212ENST00000564574 TSPAN1O60635 241 aa22.63■■□□□ 1.21
CLN3-212ENST00000564574 CSDE1O75534 798 aaKnown RBP22.63■■□□□ 1.21
CLN3-212ENST00000564574 CCL23P55773 120 aa22.63■■□□□ 1.21
CLN3-212ENST00000564574 MBTPS1Q14703 1052 aa22.63■■□□□ 1.21
CLN3-212ENST00000564574 DPCR1Q3MIW9 517 aa22.63■■□□□ 1.21
CLN3-212ENST00000564574 BICD1Q96G01 975 aa22.63■■□□□ 1.21
CLN3-212ENST00000564574 GBP3Q9H0R5 595 aa22.63■■□□□ 1.21
CLN3-212ENST00000564574 ERVK-5Q9HDB9 667 aa22.63■■□□□ 1.21
CLN3-212ENST00000564574 ST3GAL5Q9UNP4 418 aa22.63■■□□□ 1.21
CLN3-212ENST00000564574 MAPK8IP1Q9UQF2 711 aa22.63■■□□□ 1.21
CLN3-212ENST00000564574 LTBP2Q14767 1821 aa22.63■■□□□ 1.21
CLN3-212ENST00000564574 CXCL10P02778 98 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 HOXD13P35453 343 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 LIG4P49917 911 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 KCNA1Q09470 495 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 MFSD5Q6N075 450 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 NELFCDQ8IXH7 590 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 TMEM199Q8N511 208 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 GOLGA5Q8TBA6 731 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 AGO3Q9H9G7 860 aaKnown RBP22.62■■□□□ 1.21
CLN3-212ENST00000564574 CHST12Q9NRB3 414 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 AGPAT5Q9NUQ2 364 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 TYW1Q9NV66 732 aaKnown RBP22.62■■□□□ 1.21
CLN3-212ENST00000564574 PADI3Q9ULW8 664 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 TNFSF13BQ9Y275 285 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 ZMYM2Q9UBW7 1377 aa22.62■■□□□ 1.21
CLN3-212ENST00000564574 PDXKO00764 312 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 HNRNPDLO14979 420 aaKnown RBP22.61■■□□□ 1.21
CLN3-212ENST00000564574 NBNO60934 754 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 CD44P16070 742 aaKnown RBP22.61■■□□□ 1.21
CLN3-212ENST00000564574 FGFR4P22455 802 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 CCNE1P24864 410 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 CD52P31358 61 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 CENPPQ6IPU0 288 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 FOXR2Q6PJQ5 311 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 HS2ST1Q7LGA3 356 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 DPF3Q92784 378 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 APBB2Q92870 758 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 CCDC51Q96ER9 411 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 SCLYQ96I15 445 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 ACO2Q99798 780 aaKnown RBP22.61■■□□□ 1.21
CLN3-212ENST00000564574 IFIH1Q9BYX4 1025 aaKnown RBP22.61■■□□□ 1.21
CLN3-212ENST00000564574 GZF1Q9H116 711 aaPredicted RBP22.61■■□□□ 1.21
CLN3-212ENST00000564574 KCTD10Q9H3F6 313 aa22.61■■□□□ 1.21
CLN3-212ENST00000564574 BICDL2A1A5D9 508 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 N4BP3O15049 544 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 CALUO43852 315 aaPredicted RBP22.6■■□□□ 1.21
CLN3-212ENST00000564574 TOM1L1O75674 476 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 EDN1P05305 212 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 ARF4P18085 180 aaPredicted RBP22.6■■□□□ 1.21
CLN3-212ENST00000564574 ERCC5P28715 1186 aaPredicted RBP22.6■■□□□ 1.21
CLN3-212ENST00000564574 ZNF445P59923 1031 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 NFX1Q12986 1120 aaKnown RBP22.6■■□□□ 1.21
CLN3-212ENST00000564574 PAK1Q13153 545 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 GPNMBQ14956 572 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 TMEM132AQ24JP5 1023 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 PLEKHG4Q58EX7 1191 aa22.6■■□□□ 1.21
CLN3-212ENST00000564574 ATF7IP2Q5U623 682 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms