RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 INO80BQ9C086 356 aaPredicted RBP8.26□□□□□ -1.09
VPS4A-203ENST00000564399 GLT8D2Q9H1C3 349 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 FAM105AQ9NUU6 356 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS4A-203ENST00000564399 USP18Q9UMW8 372 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 SSX2IPQ9Y2D8 614 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 V9GY48 417 aaPredicted RBP8.26□□□□□ -1.09
VPS4A-203ENST00000564399 USP24Q9UPU5 2620 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 TDRD15B5MCY1 1934 aaKnown RBP8.25□□□□□ -1.09
VPS4A-203ENST00000564399 IGLV3-22A0A075B6J6 115 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 WDR64B1ANS9 1081 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 TEX28O15482 410 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 ZNF862O60290 1169 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 B4GALT3O60512 393 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 LILRB3O75022 631 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 ZNF623O75123 536 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 DDHD2O94830 711 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 IGHDP01880 384 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 SOD2P04179 222 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 CYP3A4P08684 503 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 ATXN8OSP0DMR3 200 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 CHMLP26374 656 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 DNM2P50570 870 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 STARD6P59095 220 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 CDC42EP1Q00587 391 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 SETQ01105 290 aaPredicted RBP8.25□□□□□ -1.09
VPS4A-203ENST00000564399 PRKCEQ02156 737 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 DRP2Q13474 957 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 SNW1Q13573 536 aaKnown RBP8.25□□□□□ -1.09
VPS4A-203ENST00000564399 UBXN2BQ14CS0 331 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 ZNF528Q3MIS6 628 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 PRR16Q569H4 304 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 PALB2Q86YC2 1186 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 MAML2Q8IZL2 1156 aaPredicted RBP8.25□□□□□ -1.09
VPS4A-203ENST00000564399 BORCS6Q96GS4 357 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 RPS6KC1Q96S38 1066 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 RTKNQ9BST9 563 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 TRAIPQ9BWF2 469 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 SLC2A4RGQ9NR83 387 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 DISC1Q9NRI5 854 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 KANSL3Q9P2N6 904 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 FBXO4Q9UKT5 387 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 PRG3Q9Y2Y8 225 aaPredicted RBP8.25□□□□□ -1.09
VPS4A-203ENST00000564399 RBM8AQ9Y5S9 174 aaKnown RBP8.25□□□□□ -1.09
VPS4A-203ENST00000564399 NUMBLQ9Y6R0 609 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 CNTNAP5Q8WYK1 1306 aa8.25□□□□□ -1.09
VPS4A-203ENST00000564399 PATJQ8NI35 1801 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 KANSL1LA0AUZ9 987 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 FAM170BA6NMN3 283 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 hCG_1984214I3L0E3 225 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 NRP1O14786 923 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 CHMP2AO43633 222 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 GAS2O43903 313 aaKnown RBP8.24□□□□□ -1.09
VPS4A-203ENST00000564399 POMCP01189 267 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 OR1G1P47890 313 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 GLUD2P49448 558 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 CLK2P49760 499 aaKnown RBP8.24□□□□□ -1.09
VPS4A-203ENST00000564399 GPC5P78333 572 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 HTR4Q13639 388 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 MTERF2Q49AM1 385 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 TTC22Q5TAA0 569 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 AGMOQ6ZNB7 445 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 TAS1R1Q7RTX1 841 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 RHPN2Q8IUC4 686 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 GLYCTKQ8IVS8 523 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 ZNF713Q8N859 430 aaPredicted RBP8.24□□□□□ -1.09
VPS4A-203ENST00000564399 MAP4K1Q92918 833 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 ZNF707Q96C28 371 aaPredicted RBP8.24□□□□□ -1.09
VPS4A-203ENST00000564399 TMEM175Q9BSA9 504 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 HERC2P3Q9BVR0 1158 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 RHOBTB2Q9BYZ6 727 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 NT5C3AQ9H0P0 336 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 PLEKHA4Q9H4M7 779 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 RSAD1Q9HA92 442 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 RBM28Q9NW13 759 aaKnown RBP8.24□□□□□ -1.09
VPS4A-203ENST00000564399 BARHL2Q9NY43 387 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 GMEB2Q9UKD1 530 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 SMG5Q9UPR3 1016 aaKnown RBP8.24□□□□□ -1.09
VPS4A-203ENST00000564399 PCDHB2Q9Y5E7 798 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 PCDHGA2Q9Y5H1 932 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 DNAH14Q0VDD8 3507 aa8.24□□□□□ -1.09
VPS4A-203ENST00000564399 ANHXE9PGG2 379 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 SGSM2O43147 1006 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 ADRB1P08588 477 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 GSPT1P15170 499 aaKnown RBP8.23□□□□□ -1.09
VPS4A-203ENST00000564399 FSHRP23945 695 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 AFF1P51825 1210 aaKnown RBP8.23□□□□□ -1.09
VPS4A-203ENST00000564399 AAMPQ13685 434 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 MLF2Q15773 248 aaPredicted RBP8.23□□□□□ -1.09
VPS4A-203ENST00000564399 UGCGQ16739 394 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 RTN1Q16799 776 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 ZNF410Q86VK4 478 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 HDAC7Q8WUI4 952 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 NLRP4Q96MN2 994 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 SH2D3AQ9BRG2 576 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 RPP25Q9BUL9 199 aaKnown RBP8.23□□□□□ -1.09
VPS4A-203ENST00000564399 PRKD2Q9BZL6 878 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 ZSCAN32Q9NX65 697 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 SUCLA2Q9P2R7 463 aaPredicted RBP8.23□□□□□ -1.09
VPS4A-203ENST00000564399 SEPT9Q9UHD8 586 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms