RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 IFT74Q96LB3 600 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 ACCSQ96QU6 501 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 GBP3Q9H0R5 595 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 TMX1Q9H3N1 280 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 IL23AQ9NPF7 189 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 TRMT13Q9NUP7 481 aaKnown RBP9.79□□□□□ -0.84
VPS39-207ENST00000563692 SPTLC3Q9NUV7 552 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 MTMR10Q9NXD2 777 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 EXOC7Q9UPT5 735 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 STXBP5LQ9Y2K9 1186 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 MAFBQ9Y5Q3 323 aaPredicted RBP9.79□□□□□ -0.84
VPS39-207ENST00000563692 LTBP2Q14767 1821 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 IGKV6D-21A0A0A0MT36 114 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 K7ENM7 598 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 NOP56O00567 594 aaKnown RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 SLC16A3O15427 465 aaKnown RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 ARHGAP6O43182 974 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 ZSCAN12O43309 604 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 GGPS1O95749 300 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 FGBP02675 491 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 NR3C1P04150 777 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 TUBB4AP04350 444 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 PFKMP08237 780 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 ACRP10323 421 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 EPB41P11171 864 aaKnown RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 CYP2C9P11712 490 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 CASP14P31944 242 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 STAT5BP51692 787 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 CASP5P51878 434 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 ADKP55263 362 aaKnown RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 CCL23P55773 120 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 NPEPPSP55786 919 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 TMEM240Q5SV17 173 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 CELF3Q5SZQ8 465 aaKnown RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 ZNF365Q70YC5 407 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 TRMT1LQ7Z2T5 733 aaKnown RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 CCDC60Q8IWA6 550 aaPredicted RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 C7orf31Q8N865 590 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 TC2NQ8N9U0 490 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 AFAP1L1Q8TED9 768 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 EEF2KMTQ96G04 330 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 FAM167AQ96KS9 214 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 FAM161BQ96MY7 647 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 SPATA33Q96N06 139 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 ERGIC2Q96RQ1 377 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.78□□□□□ -0.84
VPS39-207ENST00000563692 NIFKQ9BYG3 293 aaKnown RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 FGFBP2Q9BYJ0 223 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 ST6GALNAC4Q9H4F1 302 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 ATP6V0A4Q9HBG4 840 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 POLD4Q9HCU8 107 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 CYP26B1Q9NR63 512 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 KCND1Q9NSA2 647 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 ZNHIT6Q9NWK9 470 aaKnown RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 ARMCX3Q9UH62 379 aaPredicted RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 SEPT9Q9UHD8 586 aaPredicted RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 FRMD4BQ9Y2L6 1034 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 LUC7L2Q9Y383 392 aaKnown RBP9.78□□□□□ -0.84
VPS39-207ENST00000563692 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.78□□□□□ -0.84
VPS39-207ENST00000563692 LCTP09848 1927 aa9.78□□□□□ -0.84
VPS39-207ENST00000563692 SZT2Q5T011 3432 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 TMEM265A0A087WTH1 108 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 GSTTP1A0A1W2PQM5 241 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 CCDC169A6NNP5 214 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 PITPNM1O00562 1244 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 ZNF862O60290 1169 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 SORBS3O60504 671 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 MFAP3LO75121 409 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 PPFIA4O75335 1185 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 STBD1O95210 358 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 OATP04181 439 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 ACTN1P12814 892 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 TRIM21P19474 475 aaKnown RBP9.77□□□□□ -0.85
VPS39-207ENST00000563692 RFC2P35250 354 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 PSMC2P35998 433 aaKnown RBP9.77□□□□□ -0.85
VPS39-207ENST00000563692 RFC5P40937 340 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 SLC26A2P50443 739 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 POLGP54098 1239 aaPredicted RBP9.77□□□□□ -0.85
VPS39-207ENST00000563692 PEX3P56589 373 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 GTF2BQ00403 316 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 PRKCEQ02156 737 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 MAPK7Q13164 816 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 DMP1Q13316 513 aaPredicted RBP9.77□□□□□ -0.85
VPS39-207ENST00000563692 HSP90AA2PQ14568 343 aaPredicted RBP9.77□□□□□ -0.85
VPS39-207ENST00000563692 SYCP1Q15431 976 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 PTGISQ16647 500 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 ZC2HC1CQ53FD0 456 aaPredicted RBP9.77□□□□□ -0.85
VPS39-207ENST00000563692 FIGNQ5HY92 759 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 PLA2G4FQ68DD2 849 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.77□□□□□ -0.85
VPS39-207ENST00000563692 PLPPR4Q7Z2D5 763 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 HAUS6Q7Z4H7 955 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 TMTC1Q8IUR5 882 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 DAW1Q8N136 415 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 OR8K1Q8NGG5 319 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 SPIRE2Q8WWL2 714 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 SLC7A3Q8WY07 619 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 HERVK_113Q902F9 699 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 HVCN1Q96D96 273 aa9.77□□□□□ -0.85
VPS39-207ENST00000563692 JPH2Q9BR39 696 aaPredicted RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms