RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 TOPORSQ9NS56 1045 aaPredicted RBP11.77□□□□□ -0.53
TPM1-229ENST00000561242 KANSL3Q9P2N6 904 aa11.77□□□□□ -0.53
TPM1-229ENST00000561242 PCDHA11Q9Y5I1 949 aa11.77□□□□□ -0.53
TPM1-229ENST00000561242 MYH7BA7E2Y1 1941 aa11.77□□□□□ -0.53
TPM1-229ENST00000561242 NPHP3-ACAD11A0A0J9YXS1 232 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 PVALEFA0A1B0GWK0 134 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 CLDN3O15551 220 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 GTPBP6O43824 516 aaPredicted RBP11.76□□□□□ -0.53
TPM1-229ENST00000561242 HARSP12081 509 aaKnown RBP11.76□□□□□ -0.53
TPM1-229ENST00000561242 NDUFA8P51970 172 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 MKRN4PQ13434 485 aaPredicted RBP11.76□□□□□ -0.53
TPM1-229ENST00000561242 C9orf50Q5SZB4 431 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 AXDND1Q5T1B0 1012 aaPredicted RBP11.76□□□□□ -0.53
TPM1-229ENST00000561242 ATF7IP2Q5U623 682 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 HS2ST1Q7LGA3 356 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 KCNK18Q7Z418 384 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 STAMQ92783 540 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 SMARCE1Q969G3 411 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 SYAP1Q96A49 352 aaPredicted RBP11.76□□□□□ -0.53
TPM1-229ENST00000561242 TIFAQ96CG3 184 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 HVCN1Q96D96 273 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 C7orf25Q9BPX7 421 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 APOL6Q9BWW8 343 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 TSPYL2Q9H2G4 693 aaPredicted RBP11.76□□□□□ -0.53
TPM1-229ENST00000561242 ELAC1Q9H777 363 aaKnown RBP11.76□□□□□ -0.53
TPM1-229ENST00000561242 BLOC1S4Q9NUP1 217 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 AGPAT5Q9NUQ2 364 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 TMEM161AQ9NX61 479 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 TBC1D7Q9P0N9 293 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 PCDHB12Q9Y5F1 795 aa11.76□□□□□ -0.53
TPM1-229ENST00000561242 MYMKA6NI61 221 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 TBKBP1A7MCY6 615 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 HNRNPDLO14979 420 aaKnown RBP11.75□□□□□ -0.53
TPM1-229ENST00000561242 NPTXRO95502 500 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 EPHB4P54760 987 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 LRIT3Q3SXY7 679 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 ZNF568Q3ZCX4 644 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 PPP2R2DQ66LE6 453 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 KRBA2Q6ZNG9 492 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 UNC13DQ70J99 1090 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 IFNLR1Q8IU57 520 aaPredicted RBP11.75□□□□□ -0.53
TPM1-229ENST00000561242 TOP1MTQ969P6 601 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 PAGE5Q96GU1 130 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 CPB2Q96IY4 423 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 SAMD11Q96NU1 681 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 CEP89Q96ST8 783 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 NTPCRQ9BSD7 190 aaKnown RBP11.75□□□□□ -0.53
TPM1-229ENST00000561242 IFT122Q9HBG6 1241 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 FAM105AQ9NUU6 356 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 ANKFY1Q9P2R3 1169 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 PUF60Q9UHX1 559 aaKnown RBP11.75□□□□□ -0.53
TPM1-229ENST00000561242 PCDHB2Q9Y5E7 798 aa11.75□□□□□ -0.53
TPM1-229ENST00000561242 A0A0U1RQF3 1178 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 XPOTO43592 962 aaKnown RBP11.74□□□□□ -0.53
TPM1-229ENST00000561242 TSPAN1O60635 241 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 CLSTN1O94985 981 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 GJB5O95377 273 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 LDHAP00338 332 aaKnown RBP11.74□□□□□ -0.53
TPM1-229ENST00000561242 PPP1R2P41236 205 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 ALDH7A1P49419 539 aaKnown RBP11.74□□□□□ -0.53
TPM1-229ENST00000561242 KRT17Q04695 432 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 MBTD1Q05BQ5 628 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 FAM187BQ17R55 369 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 LONRF3Q496Y0 759 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 HABP4Q5JVS0 413 aaKnown RBP11.74□□□□□ -0.53
TPM1-229ENST00000561242 FAM26FQ5R3K3 315 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 PPP4R3CPQ6ZMV5 832 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.74□□□□□ -0.53
TPM1-229ENST00000561242 C16orf59Q7L2K0 433 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 ZBTB33Q86T24 672 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 SFR1Q86XK3 245 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 ECHDC2Q86YB7 292 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 GOLGA5Q8TBA6 731 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 TMEM40Q8WWA1 233 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 TIGD1Q96MW7 591 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 GAS2L1Q99501 681 aaPredicted RBP11.74□□□□□ -0.53
TPM1-229ENST00000561242 TSG101Q99816 390 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 TRIM9Q9C026 710 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 BLZF1Q9H2G9 400 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 KBTBD4Q9NVX7 518 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 TBX20Q9UMR3 447 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 INPP5FQ9Y2H2 1132 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.74□□□□□ -0.53
TPM1-229ENST00000561242 CNTNAP2Q9UHC6 1331 aa11.74□□□□□ -0.53
TPM1-229ENST00000561242 TOM1L1O75674 476 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 MBD3O95983 291 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 RPN1P04843 607 aaKnown RBP11.73□□□□□ -0.53
TPM1-229ENST00000561242 ARF4P18085 180 aaPredicted RBP11.73□□□□□ -0.53
TPM1-229ENST00000561242 CA8P35219 290 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 MBTPS1Q14703 1052 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 PTPROQ16827 1216 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 PAN2Q504Q3 1202 aaKnown RBP11.73□□□□□ -0.53
TPM1-229ENST00000561242 ARSHQ5FYA8 562 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 CDCA2Q69YH5 1023 aaPredicted RBP11.73□□□□□ -0.53
TPM1-229ENST00000561242 TRAF7Q6Q0C0 670 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 ZPBP2Q6X784 338 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 USP37Q86T82 979 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 POMGNT1Q8WZA1 660 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 PPP2R3CQ969Q6 453 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 FAM212AQ96EL1 285 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms