RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 CA3P07451 260 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 GAP43P17677 238 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 ARF4P18085 180 aaPredicted RBP14.33□□□□□ -0.12
NEDD8-208ENST00000560427 HOXA11P31270 313 aaPredicted RBP14.33□□□□□ -0.12
NEDD8-208ENST00000560427 NCKAP1LP55160 1127 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 PRPF4BQ13523 1007 aaKnown RBP14.33□□□□□ -0.12
NEDD8-208ENST00000560427 PPP2R2DQ66LE6 453 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 FAM117BQ6P1L5 589 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 CNNM4Q6P4Q7 775 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 APBB1IPQ7Z5R6 666 aaPredicted RBP14.33□□□□□ -0.12
NEDD8-208ENST00000560427 TMCO2Q7Z6W1 182 aaPredicted RBP14.33□□□□□ -0.12
NEDD8-208ENST00000560427 ECHDC2Q86YB7 292 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 CMTR2Q8IYT2 770 aaKnown RBP14.33□□□□□ -0.12
NEDD8-208ENST00000560427 DDX12PQ92771 950 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 DHX58Q96C10 678 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 ZNF689Q96CS4 500 aaPredicted RBP14.33□□□□□ -0.12
NEDD8-208ENST00000560427 CHAMP1Q96JM3 812 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 IPO9Q96P70 1041 aaKnown RBP14.33□□□□□ -0.12
NEDD8-208ENST00000560427 HPSEQ9Y251 543 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 A0A1B0GUA9 196 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 MYMKA6NI61 221 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 POLR2DO15514 142 aaKnown RBP14.32□□□□□ -0.12
NEDD8-208ENST00000560427 UPP2O95045 317 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 MAPTP10636 758 aaKnown RBP14.32□□□□□ -0.12
NEDD8-208ENST00000560427 PFKFB1P16118 471 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 RAD51AP2Q09MP3 1159 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 SLC27A1Q6PCB7 646 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 ZNF598Q86UK7 904 aaKnown RBP14.32□□□□□ -0.12
NEDD8-208ENST00000560427 HACE1Q8IYU2 909 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 CEP57L1Q8IYX8 460 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 MRPS27Q92552 414 aaKnown RBP14.32□□□□□ -0.12
NEDD8-208ENST00000560427 PGBD4Q96DM1 585 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 SAMD11Q96NU1 681 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 KIFC3Q9BVG8 833 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 NKX2-4Q9H2Z4 354 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 ST6GALNAC4Q9H4F1 302 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 TSHZ2Q9NRE2 1034 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 RWDD3Q9Y3V2 267 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 ZMYM2Q9UBW7 1377 aa14.32□□□□□ -0.12
NEDD8-208ENST00000560427 NPHP3-ACAD11A0A0J9YXS1 232 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 FRMD3A2A2Y4 597 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 LINC01553A4QN01 128 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 GOLGA6L4A6NEF3 574 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 SFI1A8K8P3 1242 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 N4BP3O15049 544 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 B4GALT5O43286 388 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 TRAK2O60296 914 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 MYL1P05976 194 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 SLFN14P0C7P3 912 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 MYOGP15173 224 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 CACNB1Q02641 598 aaPredicted RBP14.31□□□□□ -0.12
NEDD8-208ENST00000560427 STRN3Q13033 797 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 FAM178BQ8IXR5 827 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 ABI1Q8IZP0 508 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 MYCT1Q8N699 235 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 TMEM161BQ8NDZ6 487 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 DNAJC19Q96DA6 116 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 ADPGKQ9BRR6 497 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 MRPL4Q9BYD3 311 aaKnown RBP14.31□□□□□ -0.12
NEDD8-208ENST00000560427 PANK2Q9BZ23 570 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 TRIM6Q9C030 488 aaPredicted RBP14.31□□□□□ -0.12
NEDD8-208ENST00000560427 TMEM117Q9H0C3 514 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 ZNF576Q9H609 170 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 POLD4Q9HCU8 107 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 UBN1Q9NPG3 1134 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 OLFML3Q9NRN5 406 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 PCDHB2Q9Y5E7 798 aa14.31□□□□□ -0.12
NEDD8-208ENST00000560427 GBF1Q92538 1859 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 CARNS1A5YM72 827 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 SLC16A4O15374 487 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 ATF7P17544 494 aaPredicted RBP14.3□□□□□ -0.12
NEDD8-208ENST00000560427 SYKP43405 635 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 TAP1Q03518 808 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 ALCAMQ13740 583 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 BTG3Q14201 252 aaPredicted RBP14.3□□□□□ -0.12
NEDD8-208ENST00000560427 TMEM132AQ24JP5 1023 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 DCAF4L1Q3SXM0 396 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 UBXN11Q5T124 520 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 ZPBP2Q6X784 338 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 DYMQ7RTS9 669 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 HAUS6Q7Z4H7 955 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 MRPL10Q7Z7H8 261 aaKnown RBP14.3□□□□□ -0.12
NEDD8-208ENST00000560427 CCDC65Q8IXS2 484 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 FIBCD1Q8N539 461 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 HVCN1Q96D96 273 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 CCDC34Q96HJ3 373 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 CPB2Q96IY4 423 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 TGS1Q96RS0 853 aaKnown RBP14.3□□□□□ -0.12
NEDD8-208ENST00000560427 C7orf25Q9BPX7 421 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 MRPL9Q9BYD2 267 aaKnown RBP14.3□□□□□ -0.12
NEDD8-208ENST00000560427 TRIM9Q9C026 710 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 TTYH1Q9H313 450 aaPredicted RBP14.3□□□□□ -0.12
NEDD8-208ENST00000560427 ZHX3Q9H4I2 956 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 GDPD2Q9HCC8 539 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 TNFSF13BQ9Y275 285 aa14.3□□□□□ -0.12
NEDD8-208ENST00000560427 A0A1B0GVL5 298 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 LCHNA4D1U4 455 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 K7ENM7 598 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 ACTN4O43707 911 aaKnown RBP14.29□□□□□ -0.12
NEDD8-208ENST00000560427 NDUFA8P51970 172 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms